Chlorine in PDB 7a70: Hew Lysozyme in Complex with Ti(Oh)4
Enzymatic activity of Hew Lysozyme in Complex with Ti(Oh)4
All present enzymatic activity of Hew Lysozyme in Complex with Ti(Oh)4:
3.2.1.17;
Protein crystallography data
The structure of Hew Lysozyme in Complex with Ti(Oh)4, PDB code: 7a70
was solved by
V.Calderone,
L.Gigli,
E.Ravera,
C.Luchinat,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
27.61 /
1.80
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.09,
78.09,
37.29,
90,
90,
90
|
R / Rfree (%)
|
19.4 /
23.9
|
Other elements in 7a70:
The structure of Hew Lysozyme in Complex with Ti(Oh)4 also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Hew Lysozyme in Complex with Ti(Oh)4
(pdb code 7a70). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Hew Lysozyme in Complex with Ti(Oh)4, PDB code: 7a70:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 7a70
Go back to
Chlorine Binding Sites List in 7a70
Chlorine binding site 1 out
of 4 in the Hew Lysozyme in Complex with Ti(Oh)4
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Hew Lysozyme in Complex with Ti(Oh)4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:27.3
occ:1.00
|
OH
|
A:TYR23
|
3.0
|
19.2
|
1.0
|
O
|
A:HOH359
|
3.5
|
24.1
|
1.0
|
CZ
|
A:TYR23
|
3.8
|
21.2
|
1.0
|
CE2
|
A:TYR23
|
3.8
|
17.1
|
1.0
|
CA
|
A:GLY104
|
4.0
|
15.7
|
1.0
|
O
|
A:HOH361
|
4.3
|
38.8
|
1.0
|
N
|
A:GLY104
|
4.5
|
18.5
|
1.0
|
O
|
A:ARG21
|
4.6
|
24.8
|
1.0
|
O
|
A:HOH328
|
4.9
|
22.2
|
1.0
|
CE1
|
A:TYR23
|
4.9
|
19.5
|
1.0
|
CD2
|
A:TYR23
|
5.0
|
19.8
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 7a70
Go back to
Chlorine Binding Sites List in 7a70
Chlorine binding site 2 out
of 4 in the Hew Lysozyme in Complex with Ti(Oh)4
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Hew Lysozyme in Complex with Ti(Oh)4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:35.2
occ:1.00
|
N
|
A:GLY26
|
3.1
|
19.4
|
1.0
|
OG
|
A:SER24
|
3.1
|
20.1
|
1.0
|
CB
|
A:SER24
|
3.5
|
30.2
|
1.0
|
CA
|
A:GLY26
|
3.6
|
22.6
|
1.0
|
CA
|
A:GLN121
|
3.7
|
28.8
|
1.0
|
CD1
|
A:ILE124
|
3.8
|
37.3
|
1.0
|
N
|
A:LEU25
|
4.0
|
26.4
|
1.0
|
CB
|
A:GLN121
|
4.0
|
40.7
|
1.0
|
N
|
A:GLN121
|
4.1
|
28.7
|
1.0
|
C
|
A:LEU25
|
4.2
|
21.7
|
1.0
|
C
|
A:SER24
|
4.2
|
22.8
|
1.0
|
CG1
|
A:ILE124
|
4.3
|
32.1
|
1.0
|
CG
|
A:GLN121
|
4.4
|
47.1
|
1.0
|
CG2
|
A:VAL120
|
4.4
|
27.2
|
1.0
|
C
|
A:VAL120
|
4.5
|
24.6
|
1.0
|
O
|
A:VAL120
|
4.5
|
27.4
|
1.0
|
CA
|
A:LEU25
|
4.5
|
20.0
|
1.0
|
CA
|
A:SER24
|
4.5
|
26.2
|
1.0
|
CD
|
A:GLN121
|
4.5
|
58.9
|
1.0
|
OE1
|
A:GLN121
|
4.6
|
66.5
|
1.0
|
C
|
A:GLY26
|
4.7
|
23.3
|
1.0
|
O
|
A:SER24
|
4.7
|
22.0
|
1.0
|
N
|
A:ASN27
|
4.8
|
24.2
|
1.0
|
CB
|
A:LEU25
|
4.8
|
26.7
|
1.0
|
C
|
A:GLN121
|
4.9
|
30.3
|
1.0
|
O
|
A:HOH376
|
4.9
|
41.7
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 7a70
Go back to
Chlorine Binding Sites List in 7a70
Chlorine binding site 3 out
of 4 in the Hew Lysozyme in Complex with Ti(Oh)4
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Hew Lysozyme in Complex with Ti(Oh)4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl204
b:48.4
occ:1.00
|
N
|
A:ILE88
|
3.5
|
25.3
|
1.0
|
CE1
|
A:HIS15
|
3.6
|
35.0
|
1.0
|
CG1
|
A:ILE88
|
3.7
|
25.1
|
1.0
|
OD1
|
A:ASP87
|
3.9
|
31.5
|
1.0
|
CA
|
A:ASP87
|
4.0
|
28.8
|
1.0
|
NH2
|
A:ARG14
|
4.2
|
45.9
|
1.0
|
O
|
A:SER86
|
4.2
|
30.1
|
1.0
|
C
|
A:ASP87
|
4.2
|
28.5
|
1.0
|
CB
|
A:ALA11
|
4.3
|
34.1
|
1.0
|
ND1
|
A:HIS15
|
4.4
|
30.7
|
1.0
|
CB
|
A:ILE88
|
4.4
|
29.0
|
1.0
|
CA
|
A:ILE88
|
4.4
|
26.7
|
1.0
|
CG2
|
A:ILE88
|
4.5
|
28.1
|
1.0
|
CD1
|
A:ILE88
|
4.6
|
25.1
|
1.0
|
CZ
|
A:PHE3
|
4.6
|
26.8
|
1.0
|
NE2
|
A:HIS15
|
4.6
|
41.1
|
1.0
|
CG
|
A:ASP87
|
4.6
|
37.8
|
1.0
|
CB
|
A:ASP87
|
4.7
|
30.3
|
1.0
|
N
|
A:THR89
|
4.9
|
26.1
|
1.0
|
N
|
A:ASP87
|
5.0
|
30.0
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 7a70
Go back to
Chlorine Binding Sites List in 7a70
Chlorine binding site 4 out
of 4 in the Hew Lysozyme in Complex with Ti(Oh)4
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Hew Lysozyme in Complex with Ti(Oh)4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:38.1
occ:1.00
|
O
|
A:HOH347
|
3.0
|
22.4
|
1.0
|
O
|
A:THR69
|
3.0
|
28.4
|
1.0
|
N
|
A:THR69
|
3.2
|
22.6
|
1.0
|
N
|
A:ARG68
|
3.5
|
28.5
|
1.0
|
C
|
A:THR69
|
3.6
|
31.5
|
1.0
|
OG
|
A:SER72
|
3.6
|
31.8
|
1.0
|
OD1
|
A:ASN65
|
3.7
|
32.1
|
1.0
|
C
|
A:GLY67
|
3.7
|
26.8
|
1.0
|
CA
|
A:THR69
|
3.8
|
26.2
|
1.0
|
CA
|
A:GLY67
|
3.9
|
26.0
|
1.0
|
N
|
A:GLY67
|
3.9
|
28.6
|
1.0
|
O
|
A:HOH369
|
3.9
|
24.3
|
1.0
|
C
|
A:ARG68
|
4.1
|
26.4
|
1.0
|
CB
|
A:THR69
|
4.2
|
27.5
|
1.0
|
CA
|
A:ARG68
|
4.3
|
28.6
|
1.0
|
OD1
|
A:ASP66
|
4.3
|
28.0
|
1.0
|
O
|
A:GLY67
|
4.4
|
33.4
|
1.0
|
N
|
A:PRO70
|
4.5
|
30.6
|
1.0
|
NA
|
A:NA201
|
4.6
|
33.1
|
1.0
|
O
|
A:HOH375
|
4.7
|
25.1
|
0.5
|
OG1
|
A:THR69
|
4.8
|
28.4
|
1.0
|
CG
|
A:ASN65
|
4.8
|
30.5
|
1.0
|
CA
|
A:PRO70
|
4.9
|
32.3
|
1.0
|
CB
|
A:SER72
|
4.9
|
28.6
|
1.0
|
C
|
A:ASP66
|
5.0
|
24.6
|
1.0
|
|
Reference:
L.Gigli,
E.Ravera,
V.Calderone,
C.Luchinat.
On the Mechanism of Bioinspired Formation of Inorganic Oxides: Structural Evidence of the Electrostatic Nature of the Interaction Between A Mononuclear Inorganic Precursor and Lysozyme. Biomolecules V. 11 2020.
ISSN: ESSN 2218-273X
PubMed: 33396930
DOI: 10.3390/BIOM11010043
Page generated: Sun Jan 24 11:05:55 2021
|