Chlorine in PDB 7ab2: Crystal Structure of Mertk Kinase Domain in Complex with UNC2025

Enzymatic activity of Crystal Structure of Mertk Kinase Domain in Complex with UNC2025

All present enzymatic activity of Crystal Structure of Mertk Kinase Domain in Complex with UNC2025:
2.7.10.1;

Protein crystallography data

The structure of Crystal Structure of Mertk Kinase Domain in Complex with UNC2025, PDB code: 7ab2 was solved by A.Pflug, M.Schimpl, W.Mccoull, J.W.M.Nissink, R.C.Overman, P.B.Rawlins, C.Truman, E.Underwood, J.Warwicker, J.Winter-Holt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.14 / 1.78
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 91.849, 92.040, 71.621, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 25

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mertk Kinase Domain in Complex with UNC2025 (pdb code 7ab2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Mertk Kinase Domain in Complex with UNC2025, PDB code: 7ab2:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7ab2

Go back to Chlorine Binding Sites List in 7ab2
Chlorine binding site 1 out of 4 in the Crystal Structure of Mertk Kinase Domain in Complex with UNC2025


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mertk Kinase Domain in Complex with UNC2025 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl902

b:37.5
occ:1.00
O A:HOH1016 3.1 41.7 1.0
N A:LYS820 3.2 36.5 1.0
CG A:LYS820 3.6 45.3 1.0
CD A:PRO802 3.7 39.0 1.0
CD A:LYS820 3.8 53.0 1.0
CA A:LEU819 3.8 35.7 1.0
CD2 A:LEU819 3.8 35.2 1.0
CB A:LYS820 3.9 38.4 1.0
CA A:TYR801 3.9 39.4 1.0
C A:LEU819 4.0 37.2 1.0
CA A:LYS820 4.1 34.8 1.0
N A:TYR801 4.1 38.5 1.0
CZ2 A:TRP791 4.2 34.5 1.0
CE A:LYS820 4.2 58.0 1.0
CG A:PRO802 4.4 40.9 1.0
CB A:LEU819 4.4 35.1 1.0
N A:PRO802 4.5 37.6 1.0
CD1 A:TYR801 4.6 40.2 1.0
O A:ARG818 4.6 38.1 1.0
CG A:LEU819 4.7 34.6 1.0
C A:TYR801 4.7 40.8 1.0
CE2 A:TRP791 4.8 34.0 1.0
NZ A:LYS820 4.8 60.4 1.0
CB A:TYR801 4.9 40.2 1.0
N A:LEU819 4.9 38.5 1.0
O A:LYS820 4.9 32.9 1.0
CH2 A:TRP791 4.9 34.0 1.0
NE1 A:TRP791 4.9 32.7 1.0
CG A:TYR801 5.0 38.0 1.0

Chlorine binding site 2 out of 4 in 7ab2

Go back to Chlorine Binding Sites List in 7ab2
Chlorine binding site 2 out of 4 in the Crystal Structure of Mertk Kinase Domain in Complex with UNC2025


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mertk Kinase Domain in Complex with UNC2025 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl903

b:39.7
occ:0.50
O A:HOH1066 3.1 37.8 1.0
NH2 A:ARG687 3.2 45.2 1.0
CA A:MET798 3.8 35.5 1.0
CG A:MET798 3.8 47.4 1.0
CZ A:ARG687 4.2 54.2 1.0
N A:MET798 4.2 35.7 1.0
NH1 A:ARG687 4.3 51.1 1.0
CB A:MET798 4.3 36.6 1.0
O A:GLY797 4.3 30.4 1.0
O A:HOH1035 4.3 46.6 1.0
C A:GLY797 4.5 33.4 1.0
N A:THR799 4.9 31.4 1.0
C A:MET798 4.9 32.8 1.0
CD2 A:LEU684 4.9 32.8 1.0

Chlorine binding site 3 out of 4 in 7ab2

Go back to Chlorine Binding Sites List in 7ab2
Chlorine binding site 3 out of 4 in the Crystal Structure of Mertk Kinase Domain in Complex with UNC2025


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Mertk Kinase Domain in Complex with UNC2025 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl904

b:54.0
occ:1.00
N A:ARG651 3.3 35.6 1.0
CE A:MET674 3.3 59.6 1.0
CG A:ARG651 3.6 67.8 1.0
NE A:ARG732 3.7 65.4 1.0
CD A:ARG651 3.7 78.3 1.0
CA A:ILE650 3.8 35.5 1.0
CG A:PRO672 3.9 38.7 1.0
CG1 A:ILE650 4.0 39.8 1.0
C A:ILE650 4.0 38.7 1.0
CB A:ARG651 4.1 50.9 1.0
SG A:CYS738 4.3 40.5 1.0
O A:VAL649 4.3 30.9 1.0
CA A:ARG651 4.3 44.0 1.0
CD A:ARG732 4.3 65.9 1.0
NH1 A:ARG732 4.4 96.5 1.0
CZ A:ARG732 4.5 83.8 1.0
CB A:ILE650 4.5 34.6 1.0
NE A:ARG651 4.6 83.8 1.0
CG A:ARG732 4.6 51.2 1.0
N A:ILE650 4.7 33.8 1.0
CB A:PRO672 4.7 35.5 1.0
CD A:PRO672 4.8 38.6 1.0
CD1 A:ILE650 4.8 40.5 1.0
C A:VAL649 4.8 31.4 1.0
O A:ARG651 4.9 47.3 1.0
CB A:CYS738 5.0 36.8 1.0

Chlorine binding site 4 out of 4 in 7ab2

Go back to Chlorine Binding Sites List in 7ab2
Chlorine binding site 4 out of 4 in the Crystal Structure of Mertk Kinase Domain in Complex with UNC2025


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Mertk Kinase Domain in Complex with UNC2025 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl905

b:58.1
occ:1.00
N A:LEU589 3.2 39.7 1.0
NH2 A:ARG584 3.3 63.6 1.0
CA A:ILE588 3.5 42.4 1.0
NH1 A:ARG584 3.8 56.4 1.0
C A:ILE588 3.9 40.0 1.0
CB A:ILE588 3.9 49.8 1.0
CZ A:ARG584 4.1 57.4 1.0
O A:LEU587 4.1 45.6 1.0
CB A:LEU589 4.2 43.8 1.0
CA A:LEU589 4.2 42.5 1.0
O A:LEU589 4.3 46.1 1.0
CG A:LEU589 4.4 45.4 1.0
N A:ILE588 4.6 41.9 1.0
CG2 A:ILE588 4.7 52.9 1.0
C A:LEU589 4.8 45.9 1.0
C A:LEU587 4.8 41.2 1.0

Reference:

A.Pflug, M.Schimpl, J.W.M.Nissink, R.C.Overman, P.B.Rawlins, C.Truman, E.Underwood, J.Warwicker, J.Winter-Holt, W.Mccoull. A-Loop Interactions in Mer Tyrosine Kinase Give Rise to Inhibitors with Two-Step Mechanism and Long Residence Time of Binding. Biochem.J. V. 477 4443 2020.
ISSN: ESSN 1470-8728
PubMed: 33119085
DOI: 10.1042/BCJ20200735
Page generated: Sun Dec 13 10:22:32 2020

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