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Chlorine in PDB 7ac2: Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source

Enzymatic activity of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source

All present enzymatic activity of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source, PDB code: 7ac2 was solved by I.Martiel, C.Padeste, A.Karpik, C.Y.Huang, L.Vera, M.Wang, M.Marsh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.51 / 1.51
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.02, 79.02, 37.08, 90, 90, 90
R / Rfree (%) 18 / 20.9

Other elements in 7ac2:

The structure of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source (pdb code 7ac2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source, PDB code: 7ac2:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7ac2

Go back to Chlorine Binding Sites List in 7ac2
Chlorine binding site 1 out of 5 in the Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:31.4
occ:1.00
 OH A:TYR23 3.0 27.6 1.0
O A:HOH348 3.3 30.6 1.0
CZ A:TYR23 3.7 28.7 1.0
CE1 A:TYR23 3.7 27.0 1.0
CA A:GLY104 4.1 24.1 1.0
O A:ARG21 4.6 31.1 1.0
N A:GLY104 4.7 27.6 1.0
O A:HOH353 4.8 51.7 1.0
CE2 A:TYR23 4.9 23.7 1.0
O A:HOH324 4.9 35.4 1.0
CD1 A:TYR23 4.9 23.1 1.0

Chlorine binding site 2 out of 5 in 7ac2

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Chlorine binding site 2 out of 5 in the Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:31.6
occ:1.00
 N A:GLY26 3.1 24.5 1.0
OG A:SER24 3.2 31.1 1.0
CB A:SER24 3.4 30.8 1.0
CA A:GLY26 3.5 24.1 1.0
CA A:GLN121 3.6 29.8 1.0
CD1 A:ILE124 3.7 44.1 1.0
N A:GLN121 3.9 29.8 1.0
CB A:GLN121 4.0 37.2 1.0
N A:LEU25 4.1 26.2 1.0
CG A:GLN121 4.2 45.5 1.0
CG1 A:ILE124 4.2 36.1 1.0
C A:SER24 4.3 28.8 1.0
C A:VAL120 4.3 27.4 1.0
C A:LEU25 4.3 26.5 1.0
O A:VAL120 4.3 27.2 1.0
CG2 A:VAL120 4.3 30.7 1.0
CA A:SER24 4.5 29.6 1.0
O A:HOH301 4.5 42.8 1.0
C A:GLY26 4.5 22.8 1.0
N A:ASN27 4.7 23.1 1.0
CA A:LEU25 4.7 26.9 1.0
O A:SER24 4.8 26.3 1.0
C A:GLN121 4.8 29.9 1.0
CB A:LEU25 5.0 27.1 1.0
CB A:VAL120 5.0 26.9 1.0

Chlorine binding site 3 out of 5 in 7ac2

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Chlorine binding site 3 out of 5 in the Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:43.6
occ:0.47
 CL A:CL203 0.0 43.6 0.5
CL A:CL203 1.6 46.7 0.5
O A:GLN57 3.1 23.5 1.0
N A:ASN59 3.2 24.5 1.0
O A:HOH401 3.5 52.5 1.0
CB A:ASN59 3.5 29.9 1.0
CA A:ILE58 3.6 24.6 1.0
C A:ILE58 3.9 24.9 1.0
O A:HOH402 4.0 33.9 1.0
CA A:ASN59 4.0 26.5 1.0
C A:GLN57 4.1 21.8 1.0
N A:ILE58 4.3 20.2 1.0
CD1 A:TRP63 4.5 29.6 1.0
NE1 A:TRP63 4.6 27.1 1.0
OD1 A:ASP52 4.7 27.5 1.0
CB A:ILE58 4.7 23.8 1.0
NE1 A:TRP108 4.7 26.6 1.0
CG A:ASN59 4.8 38.6 1.0
O A:ALA107 4.8 32.9 1.0
CG1 A:ILE58 4.9 28.3 1.0
CG2 A:ILE58 4.9 27.6 1.0
CD1 A:TRP108 4.9 29.5 1.0
O A:LEU56 5.0 23.6 1.0
CG A:ASP52 5.0 30.2 1.0

Chlorine binding site 4 out of 5 in 7ac2

Go back to Chlorine Binding Sites List in 7ac2
Chlorine binding site 4 out of 5 in the Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:46.7
occ:0.53
 CL A:CL203 0.0 46.7 0.5
CL A:CL203 1.6 43.6 0.5
NE1 A:TRP108 3.6 26.6 1.0
CD1 A:TRP108 3.8 29.5 1.0
O A:ALA107 3.8 32.9 1.0
O A:GLN57 3.9 23.5 1.0
CE2 A:TRP108 4.0 23.6 1.0
O A:HOH402 4.1 33.9 1.0
CG A:TRP108 4.3 23.0 1.0
CD2 A:TRP108 4.4 22.0 1.0
CA A:ILE58 4.4 24.6 1.0
O A:HOH401 4.4 52.5 1.0
C A:ALA107 4.4 28.1 1.0
CD1 A:ILE98 4.6 25.1 1.0
N A:ASN59 4.6 24.5 1.0
CZ2 A:TRP108 4.6 24.4 1.0
O A:LEU56 4.7 23.6 1.0
C A:GLN57 4.7 21.8 1.0
CB A:ALA107 4.7 30.1 1.0
CA A:TRP108 4.8 25.9 1.0
NE1 A:TRP63 4.8 27.1 1.0
CG2 A:ILE98 4.8 25.3 1.0
N A:TRP108 4.8 24.5 1.0
O A:HOH340 4.9 34.5 1.0
CG1 A:ILE58 5.0 28.3 1.0
CD1 A:TRP63 5.0 29.6 1.0

Chlorine binding site 5 out of 5 in 7ac2

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Chlorine binding site 5 out of 5 in the Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:31.4
occ:1.00
 O A:HOH397 3.0 43.2 1.0
O A:HOH338 3.2 25.6 1.0
N A:THR69 3.2 30.2 1.0
O A:HOH412 3.3 37.3 1.0
O A:THR69 3.3 30.9 1.0
O A:HOH329 3.3 37.7 1.0
N A:ARG68 3.6 28.5 1.0
C A:GLY67 3.6 31.3 1.0
C A:THR69 3.6 31.9 1.0
OG A:SER72 3.6 32.2 1.0
CA A:GLY67 3.7 28.9 1.0
OD1 A:ASN65 3.7 31.2 1.0
N A:GLY67 3.8 28.0 1.0
CA A:THR69 3.8 27.8 1.0
O A:HOH381 4.0 28.7 1.0
O A:GLY67 4.2 38.8 1.0
CB A:THR69 4.2 27.1 1.0
C A:ARG68 4.2 37.2 1.0
OD2 A:ASP66 4.3 26.5 1.0
CA A:ARG68 4.4 33.0 1.0
N A:PRO70 4.5 29.4 1.0
NA A:NA205 4.7 28.5 1.0
O A:HOH360 4.8 38.8 0.5
OG1 A:THR69 4.9 24.0 1.0
C A:ASP66 4.9 24.8 1.0
CA A:PRO70 4.9 30.6 1.0
CB A:SER72 4.9 29.3 1.0
CG A:ASN65 5.0 31.0 1.0
N A:ASP66 5.0 24.3 1.0

Reference:

I.Martiel, J.H.Beale, A.Karpik, C.Y.Huang, L.Vera, N.Olieric, M.Wranik, C.J.Tsai, J.Muhle, O.Aurelius, J.John, M.Hogbom, M.Wang, M.Marsh, C.Padeste. Versatile Microporous Polymer-Based Supports For Serial Macromolecular Crystallography Acta Crystallogr.,Sect.D 2021.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798321007324
Page generated: Mon Jul 29 18:25:56 2024

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