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Chlorine in PDB 7aen: Galectin-8 N-Terminal Carbohydrate Recognition Domain in Complex with Methyl 3-O-((7-Carboxy)Quinolin-2-Yl)-Methoxy)-Beta-D- Galactopyranoside

Protein crystallography data

The structure of Galectin-8 N-Terminal Carbohydrate Recognition Domain in Complex with Methyl 3-O-((7-Carboxy)Quinolin-2-Yl)-Methoxy)-Beta-D- Galactopyranoside, PDB code: 7aen was solved by M.Hassan, V.S.Klavern, M.Hakansson, M.Anderluh, T.Tomasic, Z.Jakopin, J.U.Nilsson, R.Kovacic, B.Walse, C.Diehl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.57 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.452, 61.124, 84.712, 90, 90, 90
R / Rfree (%) 13.9 / 21.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Galectin-8 N-Terminal Carbohydrate Recognition Domain in Complex with Methyl 3-O-((7-Carboxy)Quinolin-2-Yl)-Methoxy)-Beta-D- Galactopyranoside (pdb code 7aen). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Galectin-8 N-Terminal Carbohydrate Recognition Domain in Complex with Methyl 3-O-((7-Carboxy)Quinolin-2-Yl)-Methoxy)-Beta-D- Galactopyranoside, PDB code: 7aen:

Chlorine binding site 1 out of 1 in 7aen

Go back to Chlorine Binding Sites List in 7aen
Chlorine binding site 1 out of 1 in the Galectin-8 N-Terminal Carbohydrate Recognition Domain in Complex with Methyl 3-O-((7-Carboxy)Quinolin-2-Yl)-Methoxy)-Beta-D- Galactopyranoside


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Galectin-8 N-Terminal Carbohydrate Recognition Domain in Complex with Methyl 3-O-((7-Carboxy)Quinolin-2-Yl)-Methoxy)-Beta-D- Galactopyranoside within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:38.2
occ:1.00
NZ A:LYS113 3.1 46.7 1.0
N B:GLY131 3.2 26.1 1.0
N A:ASP112 3.2 32.9 1.0
CB A:ASP112 3.5 33.7 1.0
NZ B:LYS134 3.5 46.7 1.0
CB A:LEU110 3.8 26.4 1.0
CA A:ASP112 3.8 28.5 1.0
N A:LYS111 3.9 28.3 1.0
CA B:GLY131 4.0 29.0 1.0
OD2 A:ASP112 4.0 44.2 1.0
CG A:ASP112 4.1 40.0 1.0
CE A:LYS113 4.1 47.0 1.0
CB A:LYS111 4.2 27.4 1.0
C B:ILE130 4.2 23.4 1.0
N A:LYS113 4.2 26.1 1.0
CA B:ILE130 4.2 23.2 1.0
C A:LYS111 4.2 27.8 1.0
CG A:LYS113 4.3 33.8 1.0
C A:ASP112 4.3 27.6 1.0
CA A:LYS111 4.4 26.5 1.0
CG2 B:ILE130 4.4 29.5 1.0
CD1 A:LEU110 4.5 28.8 1.0
C A:LEU110 4.5 29.0 1.0
CG B:LYS134 4.5 32.3 1.0
CE B:LYS134 4.6 41.5 1.0
OE2 B:GLU133 4.6 30.2 1.0
CG A:LEU110 4.8 23.1 1.0
CA A:LEU110 4.8 27.6 1.0
CD A:LYS113 4.8 39.2 1.0
CB B:ILE130 4.9 24.4 1.0
CD B:LYS134 5.0 36.4 1.0

Reference:

M.Hassan, M.Hakansson, U.Nilsson. Crystal Structure of the Galectin-8 N-Terminal Carbohydrate Recognition Domain in Complex with the Quinoline-Galactoside Ligand To Be Published.
Page generated: Mon Jul 29 18:27:27 2024

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