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Chlorine in PDB 7af0: Structure of Sars-Cov-2 Main Protease Bound to Ipidacrine.

Enzymatic activity of Structure of Sars-Cov-2 Main Protease Bound to Ipidacrine.

All present enzymatic activity of Structure of Sars-Cov-2 Main Protease Bound to Ipidacrine.:
2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13;

Protein crystallography data

The structure of Structure of Sars-Cov-2 Main Protease Bound to Ipidacrine., PDB code: 7af0 was solved by S.Guenther, P.Reinke, D.Oberthuer, O.Yefanov, L.Gelisio, H.Ginn, J.Lieske, M.Domaracky, W.Brehm, A.Rahmani Mashour, T.A.White, J.Knoska, G.Penaesperanza, F.Koua, A.Tolstikova, M.Groessler, P.Fischer, V.Hennicke, H.Fleckenstein, F.Trost, M.Galchenkova, Y.Gevorkov, C.Li, S.Awel, L.X.Paulraj, N.Ullah, S.Falke, B.Alves Franca, M.Schwinzer, H.Brognaro, N.Werner, M.Perbandt, H.Tidow, B.Seychell, T.Beck, S.Meier, J.J.Doyle, H.Giseler, D.Melo, I.Dunkel, T.J.Lane, A.Peck, S.Saouane, J.Hakanpaeae, J.Meyer, H.Noei, P.Gribbon, B.Ellinger, M.Kuzikov, M.Wolf, L.Zhang, C.Ehrt, J.Pletzer-Zelgert, J.Wollenhaupt, C.Feiler, M.Weiss, E.C.Schulz, P.Mehrabi, B.Norton-Baker, C.Schmidt, K.Lorenzen, R.Schubert, H.Han, A.Chari, Y.Fernandez Garcia, D.Turk, R.Hilgenfeld, M.Rarey, A.Zaliani, H.N.Chapman, A.Pearson, C.Betzel, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.49 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 112.753, 52.960, 44.842, 90.00, 102.90, 90.00
R / Rfree (%) 17.8 / 22.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Sars-Cov-2 Main Protease Bound to Ipidacrine. (pdb code 7af0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of Sars-Cov-2 Main Protease Bound to Ipidacrine., PDB code: 7af0:

Chlorine binding site 1 out of 1 in 7af0

Go back to Chlorine Binding Sites List in 7af0
Chlorine binding site 1 out of 1 in the Structure of Sars-Cov-2 Main Protease Bound to Ipidacrine.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Sars-Cov-2 Main Protease Bound to Ipidacrine. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:36.7
occ:1.00
NH2 A:ARG298 3.5 31.4 1.0
O A:MET6 3.6 19.1 1.0
O A:HOH770 3.6 18.5 1.0
O A:HOH745 4.0 19.2 1.0
CD A:ARG298 4.1 31.2 1.0
CB A:MET6 4.3 21.4 1.0
C A:MET6 4.4 18.2 1.0
CZ A:ARG298 4.5 34.7 1.0
CZ A:PHE8 4.5 22.8 1.0
CG A:MET6 4.6 24.6 1.0
CE1 A:PHE8 4.6 21.8 1.0
NE A:ARG298 4.7 34.9 1.0
OD1 A:ASP295 4.8 17.7 1.0
SD A:MET6 4.8 30.6 1.0
CE2 A:PHE8 4.8 23.2 1.0
NE2 A:GLN127 4.8 16.7 1.0
O A:ALA7 4.9 16.1 1.0
C A:ALA7 4.9 16.4 1.0
CG A:ARG298 4.9 28.1 1.0
CD1 A:PHE8 5.0 21.1 1.0

Reference:

S.Guenther, P.Y.A., Reinke, Y., Fernandez-Garcia, J., Lieske, T.J., Lane, H.M., Ginn, F.H.M., Koua, C., Ehrt, W., Ewert, D., Oberthuer, O., Yefanov, S., Meier, K., Lorenzen, B., Krichel, J.D., Kopicki, L., Gelisio, W., Brehm, I., Dunkel, B., Seychell, H., Gieseler, B., Norton-Baker, B., Escudero-Perez, M., Domaracky, S., Saouane, A., Tolstikova, T.A., White, A., Hanle, M., Groessler, H., Fleckenstein, F., Trost, M., Galchenkova, Y., Gevorkov, C., Li, S., Awel, A.Peck, M., Barthelmess, F., Schluenzen, L.X., Paulraj, N., Werner, H., Andaleeb, N., Ullah, S., Falke, V., Srinivasan, B., Franca, M., Schwinzer, H., Brognaro, C., Rogers, D., Melo, J.J., Doyle, J., Knoska, G.E., Pena Murillo, A., Rahmani Mashhour, F., Guicking, V., Hennicke, P., Fischer, J., Hakanpaeae, J., Meyer, P., Gribbon, B., Ellinger, M., Kuzikov, M., Wolf, G., Burenkov, D., Von Stetten, G., Pompidor, I., Bento, S., Panneerselvam, I., Karpics, T.R., Schneider, M., Garcia Alai, S., Niebling, C., Guenther, C., Schmidt, R., Schubert, H., Han, J., Boger, D., Monteiro, L., Zhang, X., Sun, J., Pletzer-Zelgert, J., Wollenhaupt, C., Feiler, M., Weiss, E.C., Schulz, P., Mehrabi, K., Karnicar, A., Usenik, J., Loboda, H., Tidow, A., Chari, R., Hilgenfeld, C., Uetrecht, R., Cox, A., Zaliani, T., Beck, M., Rarey, S., Guenther, D., Turk, W., Hinrichs, H.N., Chapman, A., Pearson, C., Betzel, A.Meents. Inhibition of Sars-Cov-2 Main Protease By Allosteric Drug-Binding Biorxiv 2020.
DOI: 10.1101/2020.11.12.378422
Page generated: Sat Jul 12 22:41:13 2025

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