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Chlorine in PDB 7al0: Crystal Structure of Heymonin, A Novel Frog-Derived Peptide

Protein crystallography data

The structure of Crystal Structure of Heymonin, A Novel Frog-Derived Peptide, PDB code: 7al0 was solved by B.Kascakova, T.Prudnikova, I.Kuta Smatanova, X.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.73 / 2.20
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 53.8, 53.8, 64.326, 90, 90, 120
R / Rfree (%) 24.6 / 27.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Heymonin, A Novel Frog-Derived Peptide (pdb code 7al0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Heymonin, A Novel Frog-Derived Peptide, PDB code: 7al0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7al0

Go back to Chlorine Binding Sites List in 7al0
Chlorine binding site 1 out of 2 in the Crystal Structure of Heymonin, A Novel Frog-Derived Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Heymonin, A Novel Frog-Derived Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl101

b:71.8
occ:1.00
NZ A:LYS28 2.3 90.1 1.0
CE A:LYS28 3.6 89.7 1.0
CD A:LYS28 4.0 67.8 1.0
CG1 A:VAL24 4.5 44.1 1.0

Chlorine binding site 2 out of 2 in 7al0

Go back to Chlorine Binding Sites List in 7al0
Chlorine binding site 2 out of 2 in the Crystal Structure of Heymonin, A Novel Frog-Derived Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Heymonin, A Novel Frog-Derived Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl102

b:82.0
occ:0.50
O A:HOH207 3.0 67.4 1.0
CG2 A:ILE16 4.1 39.9 1.0
CG1 A:ILE16 4.3 59.9 1.0
CD A:LYS19 4.4 72.2 1.0
CB A:ILE16 4.6 42.5 1.0
CA A:ILE16 4.6 47.5 1.0
CD2 A:LEU20 4.8 47.8 1.0
CB A:LYS19 4.9 60.4 1.0
O A:ILE16 4.9 42.0 1.0

Reference:

B.Kascakova, T.Prudnikova, I.Kuta Smatanova. Characterization and Functional Analysis of Cathelicidin-Mh, A Novel Frog-Derived Peptide with Anti-Septicemic Properties Elife 2021.
ISSN: ESSN 2050-084X
Page generated: Mon Jul 29 18:34:56 2024

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