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Chlorine in PDB 7als: Alpha and Beta Lactose Isomer Structure of Galectin 8, N-Terminal Domain

Protein crystallography data

The structure of Alpha and Beta Lactose Isomer Structure of Galectin 8, N-Terminal Domain, PDB code: 7als was solved by M.Hakansson, B.Walse, C.Diehl, R.Kovacic, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.15 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.56, 62.54, 84.65, 90, 90, 90
R / Rfree (%) 14.9 / 19.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Alpha and Beta Lactose Isomer Structure of Galectin 8, N-Terminal Domain (pdb code 7als). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Alpha and Beta Lactose Isomer Structure of Galectin 8, N-Terminal Domain, PDB code: 7als:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7als

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Chlorine binding site 1 out of 3 in the Alpha and Beta Lactose Isomer Structure of Galectin 8, N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Alpha and Beta Lactose Isomer Structure of Galectin 8, N-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:25.1
occ:1.00
NZ A:LYS113 3.1 33.1 1.0
N B:GLY131 3.2 18.9 1.0
N A:ASP112 3.3 20.1 1.0
O B:HOH360 3.3 31.7 1.0
CB A:ASP112 3.6 27.4 1.0
NZ B:LYS134 3.7 64.4 1.0
CB A:LEU110 3.9 17.9 1.0
N A:LYS111 3.9 19.4 1.0
CA A:ASP112 3.9 20.9 1.0
CA B:GLY131 4.0 20.1 1.0
C B:ILE130 4.0 18.3 1.0
CA B:ILE130 4.0 18.3 1.0
CB A:LYS111 4.0 22.4 1.0
C A:LYS111 4.2 20.4 1.0
CE A:LYS113 4.2 32.1 1.0
CG2 B:ILE130 4.2 22.8 1.0
CA A:LYS111 4.3 21.0 1.0
CG A:LYS113 4.3 23.4 1.0
CG A:ASP112 4.3 35.0 1.0
OD2 A:ASP112 4.4 44.4 1.0
N A:LYS113 4.4 19.9 1.0
C A:LEU110 4.5 21.3 1.0
C A:ASP112 4.5 21.1 1.0
CD1 A:LEU110 4.6 22.1 1.0
CG B:LYS134 4.6 30.5 1.0
CB B:ILE130 4.7 20.6 1.0
CE B:LYS134 4.8 47.7 1.0
CA A:LEU110 4.8 21.8 1.0
OE2 B:GLU133 4.8 26.2 1.0
CD A:LYS113 4.8 24.4 1.0
CG A:LEU110 4.9 19.3 1.0
O B:ARG129 4.9 20.3 1.0

Chlorine binding site 2 out of 3 in 7als

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Chlorine binding site 2 out of 3 in the Alpha and Beta Lactose Isomer Structure of Galectin 8, N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Alpha and Beta Lactose Isomer Structure of Galectin 8, N-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:29.6
occ:1.00
O3 F:GAL2 2.8 24.2 0.5
O3 E:GAL2 2.9 24.2 0.5
NH2 A:ARG59 3.1 24.2 1.0
NE2 A:GLN47 3.2 20.2 1.0
NH1 A:ARG59 3.5 28.2 1.0
CZ A:ARG59 3.7 24.9 1.0
C3 F:GAL2 3.7 24.1 0.5
CZ2 A:TRP86 3.8 22.0 1.0
C3 E:GAL2 3.8 24.1 0.5
O A:HOH400 3.9 38.7 1.0
OE1 A:GLN47 3.9 21.2 1.0
O A:HOH365 3.9 35.6 1.0
CD A:GLN47 4.0 18.8 1.0
NH2 A:ARG45 4.1 23.2 1.0
CE1 A:HIS65 4.1 19.3 1.0
C4 F:GAL2 4.1 20.5 0.5
C4 E:GAL2 4.2 21.3 0.5
O4 F:GAL2 4.5 20.4 0.5
CH2 A:TRP86 4.5 20.2 1.0
O A:HOH427 4.5 45.1 1.0
CE2 A:TRP86 4.7 22.7 1.0
NE2 A:HIS65 4.7 18.5 1.0
O4 E:GAL2 4.7 20.3 0.5
ND1 A:HIS65 4.8 17.1 1.0
NE1 A:TRP86 4.8 23.9 1.0

Chlorine binding site 3 out of 3 in 7als

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Chlorine binding site 3 out of 3 in the Alpha and Beta Lactose Isomer Structure of Galectin 8, N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Alpha and Beta Lactose Isomer Structure of Galectin 8, N-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:28.6
occ:1.00
O3 G:GAL2 3.0 25.6 0.5
O3 H:GAL2 3.0 25.7 0.5
NH2 B:ARG59 3.2 27.5 1.0
NE2 B:GLN47 3.3 21.7 1.0
NH1 B:ARG59 3.4 28.9 1.0
CZ B:ARG59 3.8 24.5 1.0
O B:HOH390 3.8 39.4 1.0
CZ2 B:TRP86 3.8 23.7 1.0
C3 G:GAL2 3.8 25.4 0.5
C3 H:GAL2 3.9 25.5 0.5
OE1 B:GLN47 4.0 23.6 1.0
CD B:GLN47 4.1 22.9 1.0
CE1 B:HIS65 4.1 20.4 1.0
NH2 B:ARG45 4.1 22.8 1.0
C4 G:GAL2 4.2 22.1 0.5
C4 H:GAL2 4.2 22.0 0.5
O B:HOH361 4.4 37.6 1.0
CH2 B:TRP86 4.6 21.3 1.0
O4 G:GAL2 4.6 23.9 0.5
O4 H:GAL2 4.6 23.9 0.5
CE2 B:TRP86 4.7 22.3 1.0
NE2 B:HIS65 4.8 20.3 1.0
ND1 B:HIS65 4.8 17.7 1.0
NE1 B:TRP86 4.9 25.3 1.0

Reference:

M.Hassan, M.Hakansson. Alpha and Beta Lactose Isomer Structure of Galectin 8, N-Terminal Domain To Be Published.
Page generated: Mon Jul 29 18:35:08 2024

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