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Chlorine in PDB 7amr: Crystal Structure of the Complex of the Kfn Mutant of Jovi-1 Fab with Human TRBC1

Protein crystallography data

The structure of Crystal Structure of the Complex of the Kfn Mutant of Jovi-1 Fab with Human TRBC1, PDB code: 7amr was solved by M.Ferrari, A.Bulek, R.Bughda, R.Jha, M.Welin, D.T.Logan, A.Sewell, S.Onuoha, M.Pule, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.59 / 1.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 115.694, 91.011, 123.311, 90, 93.89, 90
R / Rfree (%) 17.9 / 22.5

Other elements in 7amr:

The structure of Crystal Structure of the Complex of the Kfn Mutant of Jovi-1 Fab with Human TRBC1 also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Complex of the Kfn Mutant of Jovi-1 Fab with Human TRBC1 (pdb code 7amr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Complex of the Kfn Mutant of Jovi-1 Fab with Human TRBC1, PDB code: 7amr:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7amr

Go back to Chlorine Binding Sites List in 7amr
Chlorine binding site 1 out of 2 in the Crystal Structure of the Complex of the Kfn Mutant of Jovi-1 Fab with Human TRBC1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Complex of the Kfn Mutant of Jovi-1 Fab with Human TRBC1 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl302

b:63.4
occ:1.00
O H:HOH486 2.4 35.8 1.0
O H:GLY44 2.8 22.5 1.0
N H:ALA40 3.1 21.4 1.0
CA H:GLN39 3.6 18.5 1.0
C H:GLY44 3.7 22.5 1.0
CB H:GLN43 3.8 27.5 1.0
C H:GLN39 3.8 20.3 1.0
CB H:ALA40 3.9 23.0 1.0
O H:ARG38 4.0 18.2 1.0
CA H:ALA40 4.1 23.2 1.0
N H:GLY44 4.1 23.1 1.0
N H:GLN39 4.3 17.6 1.0
C H:ARG38 4.4 18.0 1.0
CB H:GLU46 4.5 21.9 1.0
C H:GLN43 4.5 23.9 1.0
CA H:GLY44 4.5 23.0 1.0
N H:LEU45 4.5 22.0 1.0
N H:GLU46 4.6 19.6 1.0
OE2 H:GLU46 4.7 43.1 1.0
C H:LEU45 4.7 21.3 1.0
CA H:LEU45 4.7 21.5 1.0
CB H:GLN39 4.7 18.1 1.0
O H:ALA40 4.8 25.4 1.0
CG H:ARG38 4.8 19.4 1.0
CA H:GLN43 4.8 25.1 1.0
CG H:GLN39 4.9 17.9 1.0
CG H:GLN43 4.9 34.8 1.0
C H:ALA40 5.0 25.4 1.0

Chlorine binding site 2 out of 2 in 7amr

Go back to Chlorine Binding Sites List in 7amr
Chlorine binding site 2 out of 2 in the Crystal Structure of the Complex of the Kfn Mutant of Jovi-1 Fab with Human TRBC1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Complex of the Kfn Mutant of Jovi-1 Fab with Human TRBC1 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl504

b:69.6
occ:1.00
CB L:ARG216 2.8 35.6 1.0
O L:HOH675 2.9 30.1 1.0
CG L:ARG216 3.8 38.9 1.0
OH L:TYR191 3.9 24.5 1.0
CA L:ARG216 3.9 34.0 1.0
CD L:ARG216 4.0 42.6 1.0
O L:ASN215 4.1 30.7 1.0
CE1 L:PHE214 4.1 29.9 1.0
CD1 L:PHE214 4.1 29.6 1.0
CB L:PRO124 4.2 26.1 1.0
C L:ARG216 4.2 35.5 1.0
CG L:PRO124 4.5 26.6 1.0
N L:ARG216 4.5 32.3 1.0
C L:ASN215 4.6 31.1 1.0
O L:ARG216 4.6 37.4 1.0
N L:GLY217 4.7 34.6 1.0
NH2 L:ARG216 4.8 49.0 1.0
O L:HOH767 4.9 40.9 1.0
NE L:ARG216 4.9 46.6 1.0
NZ H:LYS225 5.0 71.0 1.0

Reference:

M.Ferrari, V.Baldan, P.Wawrzyniecka, A.Bulek, A.Kinna, B.Ma, R.Bugda, Z.Akbar, S.Srivastava, P.Ghongane, I.Gannon, M.Robson, J.Sillibourne, R.Jha, W.Lim, J.Hopkins, M.Welin, S.Surade, M.Dyson, J.Mccafferty, S.Cordoba, S.Thomas, D.Logan, A.Sewell, P.Maciocia, S.Onuoha, M.Pule. Structure-Guided Engineering of Immunotherapies Targeting TRBC1 and TRBC2 in T Cell Malignancies Res Sq 2022.
ISSN: ESSN 2693-5015
DOI: 10.21203/RS.3.RS-1475171/V1
Page generated: Sat Jul 12 22:48:23 2025

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