Chlorine in PDB 7atu: The LIMK1 Kinase Domain Bound to LIJTF500025
Enzymatic activity of The LIMK1 Kinase Domain Bound to LIJTF500025
All present enzymatic activity of The LIMK1 Kinase Domain Bound to LIJTF500025:
2.7.11.1;
Protein crystallography data
The structure of The LIMK1 Kinase Domain Bound to LIJTF500025, PDB code: 7atu
was solved by
S.Mathea,
D.Chatterjee,
F.Preuss,
S.Yamamoto,
M.Tawada,
I.Nomura,
T.Takagi,
M.Ahmed,
W.Little,
S.Mueller-Knapp,
S.Knapp,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.22 /
2.80
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
85.234,
83.838,
98.029,
90.00,
92.34,
90.00
|
R / Rfree (%)
|
24 /
31.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the The LIMK1 Kinase Domain Bound to LIJTF500025
(pdb code 7atu). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
The LIMK1 Kinase Domain Bound to LIJTF500025, PDB code: 7atu:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 7atu
Go back to
Chlorine Binding Sites List in 7atu
Chlorine binding site 1 out
of 4 in the The LIMK1 Kinase Domain Bound to LIJTF500025
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of The LIMK1 Kinase Domain Bound to LIJTF500025 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl701
b:70.5
occ:1.00
|
CL
|
A:RXN701
|
0.0
|
70.5
|
1.0
|
C4
|
A:RXN701
|
1.7
|
44.9
|
1.0
|
C5
|
A:RXN701
|
2.7
|
42.0
|
1.0
|
C3
|
A:RXN701
|
2.7
|
41.4
|
1.0
|
CB
|
A:PHE350
|
3.5
|
65.2
|
1.0
|
CD
|
A:LYS368
|
3.7
|
52.2
|
1.0
|
C6
|
A:RXN701
|
4.0
|
43.5
|
1.0
|
C2
|
A:RXN701
|
4.0
|
42.5
|
1.0
|
CB
|
A:ALA353
|
4.0
|
47.8
|
1.0
|
CB
|
A:LYS347
|
4.0
|
68.8
|
1.0
|
O
|
A:GLN352
|
4.1
|
55.4
|
1.0
|
CB
|
A:PHE479
|
4.2
|
43.1
|
1.0
|
O
|
A:PHE350
|
4.3
|
73.5
|
1.0
|
CE
|
A:LYS368
|
4.3
|
59.6
|
1.0
|
NZ
|
A:LYS368
|
4.3
|
69.6
|
1.0
|
CG
|
A:PHE350
|
4.3
|
58.2
|
1.0
|
C
|
A:PHE350
|
4.3
|
66.8
|
1.0
|
O
|
A:PHE479
|
4.4
|
48.6
|
1.0
|
CG
|
A:PHE479
|
4.4
|
44.1
|
1.0
|
C1
|
A:RXN701
|
4.5
|
43.2
|
1.0
|
CD1
|
A:PHE479
|
4.5
|
43.6
|
1.0
|
CA
|
A:PHE350
|
4.5
|
66.9
|
1.0
|
O
|
A:GLY351
|
4.6
|
63.3
|
1.0
|
CG
|
A:LYS368
|
4.6
|
54.5
|
1.0
|
C
|
A:GLN352
|
4.7
|
58.0
|
1.0
|
CD2
|
A:PHE350
|
4.8
|
60.2
|
1.0
|
N
|
A:GLY351
|
4.8
|
65.5
|
1.0
|
N
|
A:ALA353
|
4.9
|
52.2
|
1.0
|
C
|
A:GLY351
|
5.0
|
62.5
|
1.0
|
CB
|
A:LYS368
|
5.0
|
47.7
|
1.0
|
CA
|
A:PHE479
|
5.0
|
44.4
|
1.0
|
CA
|
A:ALA353
|
5.0
|
47.0
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 7atu
Go back to
Chlorine Binding Sites List in 7atu
Chlorine binding site 2 out
of 4 in the The LIMK1 Kinase Domain Bound to LIJTF500025
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of The LIMK1 Kinase Domain Bound to LIJTF500025 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl701
b:83.7
occ:1.00
|
CL
|
B:RXN701
|
0.0
|
83.7
|
1.0
|
C4
|
B:RXN701
|
1.7
|
51.2
|
1.0
|
C5
|
B:RXN701
|
2.7
|
52.8
|
1.0
|
C3
|
B:RXN701
|
2.7
|
50.9
|
1.0
|
CB
|
B:ALA353
|
3.8
|
46.6
|
1.0
|
C6
|
B:RXN701
|
4.0
|
50.0
|
1.0
|
C2
|
B:RXN701
|
4.0
|
50.2
|
1.0
|
O
|
B:GLN352
|
4.2
|
60.3
|
1.0
|
CB
|
B:PHE350
|
4.2
|
69.0
|
1.0
|
CB
|
B:LYS347
|
4.2
|
72.9
|
1.0
|
O
|
B:GLY351
|
4.3
|
77.0
|
1.0
|
CB
|
B:PHE479
|
4.3
|
45.9
|
1.0
|
O
|
B:PHE350
|
4.4
|
74.4
|
1.0
|
C
|
B:GLN352
|
4.4
|
61.3
|
1.0
|
NZ
|
B:LYS368
|
4.4
|
62.9
|
1.0
|
C1
|
B:RXN701
|
4.5
|
45.6
|
1.0
|
CG
|
B:PHE479
|
4.6
|
47.6
|
1.0
|
CD
|
B:LYS368
|
4.6
|
59.0
|
1.0
|
N
|
B:ALA353
|
4.6
|
58.0
|
1.0
|
CD1
|
B:PHE479
|
4.7
|
46.9
|
1.0
|
CG
|
B:LYS368
|
4.7
|
56.0
|
1.0
|
C
|
B:PHE350
|
4.8
|
70.9
|
1.0
|
C
|
B:GLY351
|
4.8
|
71.8
|
1.0
|
O
|
B:PHE479
|
4.8
|
52.3
|
1.0
|
CA
|
B:ALA353
|
4.8
|
50.4
|
1.0
|
CE
|
B:LYS368
|
4.9
|
62.0
|
1.0
|
O
|
B:LEU345
|
5.0
|
71.3
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 7atu
Go back to
Chlorine Binding Sites List in 7atu
Chlorine binding site 3 out
of 4 in the The LIMK1 Kinase Domain Bound to LIJTF500025
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of The LIMK1 Kinase Domain Bound to LIJTF500025 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl701
b:97.1
occ:1.00
|
CL
|
C:RXN701
|
0.0
|
97.1
|
1.0
|
C4
|
C:RXN701
|
1.7
|
69.3
|
1.0
|
C5
|
C:RXN701
|
2.7
|
65.9
|
1.0
|
C3
|
C:RXN701
|
2.7
|
63.0
|
1.0
|
CB
|
C:ALA353
|
3.9
|
76.9
|
1.0
|
C6
|
C:RXN701
|
4.0
|
62.4
|
1.0
|
C2
|
C:RXN701
|
4.0
|
66.6
|
1.0
|
O
|
C:PHE350
|
4.1
|
86.2
|
1.0
|
O
|
C:GLY351
|
4.1
|
95.1
|
1.0
|
CD1
|
C:PHE479
|
4.4
|
65.4
|
1.0
|
C1
|
C:RXN701
|
4.5
|
67.8
|
1.0
|
CG
|
C:PHE479
|
4.5
|
65.2
|
1.0
|
CB
|
C:PHE350
|
4.5
|
75.8
|
1.0
|
CB
|
C:PHE479
|
4.6
|
68.5
|
1.0
|
O
|
C:PHE479
|
4.7
|
63.2
|
1.0
|
O
|
C:GLN352
|
4.8
|
83.2
|
1.0
|
C
|
C:PHE350
|
4.8
|
87.3
|
1.0
|
C
|
C:GLN352
|
4.9
|
84.7
|
1.0
|
N
|
C:ALA353
|
5.0
|
78.3
|
1.0
|
C
|
C:GLY351
|
5.0
|
89.6
|
1.0
|
CA
|
C:ALA353
|
5.0
|
77.2
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 7atu
Go back to
Chlorine Binding Sites List in 7atu
Chlorine binding site 4 out
of 4 in the The LIMK1 Kinase Domain Bound to LIJTF500025
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of The LIMK1 Kinase Domain Bound to LIJTF500025 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl701
b:96.2
occ:1.00
|
CL
|
D:RXN701
|
0.0
|
96.2
|
1.0
|
C4
|
D:RXN701
|
1.7
|
72.9
|
1.0
|
C5
|
D:RXN701
|
2.7
|
66.7
|
1.0
|
C3
|
D:RXN701
|
2.7
|
74.6
|
1.0
|
CD1
|
D:PHE479
|
3.8
|
64.9
|
1.0
|
CG
|
D:PHE479
|
4.0
|
69.9
|
1.0
|
C6
|
D:RXN701
|
4.0
|
73.2
|
1.0
|
C2
|
D:RXN701
|
4.0
|
69.0
|
1.0
|
CB
|
D:PHE479
|
4.1
|
67.3
|
1.0
|
CE1
|
D:PHE479
|
4.4
|
62.8
|
1.0
|
C1
|
D:RXN701
|
4.5
|
70.9
|
1.0
|
CD2
|
D:PHE479
|
4.7
|
69.2
|
1.0
|
O
|
D:PHE479
|
4.8
|
68.1
|
1.0
|
CA
|
D:PHE479
|
4.8
|
68.9
|
1.0
|
|
Reference:
S.Mathea,
D.Chatterjee,
F.Preuss,
S.Yamamoto,
M.Tawada,
I.Nomura,
T.Takagi,
M.Ahmed,
W.Little,
S.Mueller-Knapp,
S.Knapp.
The LIMK1 Kinase Domain Bound to LIJTF500025 To Be Published.
Page generated: Mon Jul 29 18:42:13 2024
|