Chlorine in PDB 7azk: Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound

The structure of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound, PDB code: 7azk was solved by C.Monsarrat, G.Compain, C.Andre, I.Martiel, S.Engilberge, V.Olieric, P.Wolff, K.Brillet, M.Landolfo, C.Silva Da Veiga, J.Wagner, G.Guichard, D.Y.Burnouf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	84.09 / 2.05
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	79.815, 135.827, 87.541, 90, 106.15, 90
R / Rfree (%)	21 / 24.1

The structure of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound also contains other interesting chemical elements:

Potassium

(K)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound (pdb code 7azk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound, PDB code: 7azk:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl372 b:35.2 occ:1.00 CLZ H:ZCL372 0.0 35.2 1.0 CZ H:ZCL372 1.7 35.1 1.0 CE2 H:ZCL372 2.7 34.5 1.0 CE1 H:ZCL372 2.7 35.2 1.0 CLE1 H:ZCL372 3.2 36.6 1.0 CD1 A:LEU155 3.5 21.5 1.0 CD2 A:LEU155 3.6 21.9 1.0 CA A:GLY174 3.7 19.0 1.0 CG A:PRO242 3.8 24.8 1.0 N A:GLY174 3.9 18.2 1.0 CD2 H:ZCL372 4.0 34.6 1.0 CD1 H:ZCL372 4.0 34.0 1.0 O A:HOH527 4.1 24.4 1.0 NH1 A:ARG152 4.1 24.9 1.0 CG A:LEU155 4.2 23.1 1.0 CG2 A:THR172 4.3 21.8 1.0 CB A:PRO242 4.5 23.2 1.0 CG H:ZCL372 4.5 34.1 1.0 O A:HOH585 4.6 43.6 1.0 CZ A:ARG152 4.6 25.4 1.0 C A:ASP173 4.7 20.7 1.0 OG1 A:THR172 4.8 23.2 1.0

Chlorine binding site 2 out of 11 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl372 b:36.6 occ:1.00 CLE1 H:ZCL372 0.0 36.6 1.0 CE1 H:ZCL372 1.7 35.2 1.0 CD1 H:ZCL372 2.7 34.0 1.0 CZ H:ZCL372 2.7 35.1 1.0 CLZ H:ZCL372 3.2 35.2 1.0 OG1 A:THR172 3.7 23.2 1.0 CG2 A:THR172 3.8 21.8 1.0 CG H:ZCL372 4.0 34.1 1.0 CE2 H:ZCL372 4.0 34.5 1.0 CB H:LEU371 4.0 30.6 1.0 CD1 H:LEU371 4.0 29.2 1.0 CB A:THR172 4.3 21.7 1.0 CG A:PRO242 4.3 24.8 1.0 CB A:PRO242 4.3 23.2 1.0 CA A:GLY174 4.4 19.0 1.0 CD2 H:ZCL372 4.5 34.6 1.0 CG2 A:VAL247 4.6 38.5 1.0 N A:GLY174 4.6 18.2 1.0 CG H:LEU371 4.7 31.0 1.0 CD1 A:LEU177 4.8 26.7 1.0

Chlorine binding site 3 out of 11 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound within 5.0Å range: probe atom residue distance (Å) B Occ I:Cl372 b:64.3 occ:1.00 CLZ I:ZCL372 0.0 64.3 1.0 CZ I:ZCL372 1.7 63.4 1.0 CE2 I:ZCL372 2.7 64.0 1.0 CE1 I:ZCL372 2.7 62.0 1.0 CLE1 I:ZCL372 3.2 63.0 1.0 CB B:PRO242 3.6 41.0 1.0 CG1 B:VAL247 3.8 51.0 1.0 CG B:PRO242 3.9 40.9 1.0 CA B:TYR244 3.9 44.2 1.0 CD2 I:ZCL372 4.0 63.8 1.0 CG2 B:VAL247 4.0 50.0 1.0 CD1 I:ZCL372 4.0 60.0 1.0 CD1 B:LEU177 4.1 33.5 1.0 O B:ASP243 4.2 64.4 1.0 N B:TYR244 4.3 45.0 1.0 CB B:TYR244 4.4 43.9 1.0 C B:ASP243 4.4 64.5 1.0 CG I:ZCL372 4.5 62.0 1.0 C B:PRO242 4.6 42.4 1.0 CB B:VAL247 4.6 50.0 1.0 CG2 B:THR172 4.7 29.0 1.0 CA B:PRO242 4.7 40.2 1.0 O B:PRO242 4.7 42.3 1.0 N B:ASP243 4.8 63.3 1.0 C B:TYR244 4.9 44.7 1.0 CB I:LEU371 5.0 38.1 1.0

Chlorine binding site 4 out of 11 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound within 5.0Å range: probe atom residue distance (Å) B Occ I:Cl372 b:63.0 occ:1.00 CLE1 I:ZCL372 0.0 63.0 1.0 CE1 I:ZCL372 1.7 62.0 1.0 CD1 I:ZCL372 2.7 60.0 1.0 CZ I:ZCL372 2.7 63.4 1.0 CLZ I:ZCL372 3.2 64.3 1.0 CG2 B:THR172 3.4 29.0 1.0 OG1 B:THR172 3.4 31.3 1.0 CA B:GLY174 3.8 32.6 1.0 CG B:PRO242 3.9 40.9 1.0 N B:GLY174 4.0 30.8 1.0 CG I:ZCL372 4.0 62.0 1.0 CE2 I:ZCL372 4.0 64.0 1.0 CB B:THR172 4.0 30.0 1.0 CB I:LEU371 4.2 38.1 1.0 CD1 I:LEU371 4.3 35.4 1.0 CB B:PRO242 4.3 41.0 1.0 CD2 I:ZCL372 4.5 63.8 1.0 C B:GLY174 4.7 32.7 1.0 O B:GLY174 4.8 32.6 1.0 CD2 B:LEU155 4.8 30.2 1.0 CG I:LEU371 4.9 36.8 1.0

Chlorine binding site 5 out of 11 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound within 5.0Å range: probe atom residue distance (Å) B Occ J:Cl372 b:36.3 occ:1.00 CLZ J:ZCL372 0.0 36.3 1.0 CZ J:ZCL372 1.7 35.9 1.0 CE2 J:ZCL372 2.7 34.6 1.0 CE1 J:ZCL372 2.7 36.0 1.0 CLE1 J:ZCL372 3.2 37.8 1.0 CD2 C:LEU155 3.6 21.1 1.0 CD1 C:LEU155 3.6 22.2 1.0 CA C:GLY174 3.7 21.6 1.0 N C:GLY174 3.9 21.4 1.0 CG C:PRO242 3.9 22.0 1.0 CD2 J:ZCL372 4.0 35.6 1.0 O C:HOH618 4.0 19.9 1.0 CD1 J:ZCL372 4.0 34.2 1.0 CG2 C:THR172 4.2 20.8 1.0 CG C:LEU155 4.2 21.2 1.0 NH1 C:ARG152 4.3 30.6 1.0 CB C:PRO242 4.4 20.3 1.0 CG J:ZCL372 4.5 34.8 1.0 OG1 C:THR172 4.6 21.7 1.0 O C:HOH689 4.7 41.3 1.0 C C:ASP173 4.7 23.3 1.0 CZ C:ARG152 4.8 31.4 1.0 CD C:PRO242 5.0 21.0 1.0

Chlorine binding site 6 out of 11 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound within 5.0Å range: probe atom residue distance (Å) B Occ J:Cl372 b:37.8 occ:1.00 CLE1 J:ZCL372 0.0 37.8 1.0 CE1 J:ZCL372 1.7 36.0 1.0 CD1 J:ZCL372 2.7 34.2 1.0 CZ J:ZCL372 2.7 35.9 1.0 CLZ J:ZCL372 3.2 36.3 1.0 OG1 C:THR172 3.6 21.7 1.0 CG2 C:THR172 4.0 20.8 1.0 CG J:ZCL372 4.0 34.8 1.0 CE2 J:ZCL372 4.0 34.6 1.0 CD1 J:LEU371 4.0 27.3 1.0 CB J:LEU371 4.0 28.5 1.0 CG C:PRO242 4.2 22.0 1.0 CB C:THR172 4.3 21.3 1.0 CG1 C:VAL247 4.3 29.8 1.0 CB C:PRO242 4.4 20.3 1.0 CD2 J:ZCL372 4.5 35.6 1.0 CA C:GLY174 4.5 21.6 1.0 CG J:LEU371 4.7 28.8 1.0 N C:GLY174 4.8 21.4 1.0 CG2 C:VAL247 4.8 29.3 1.0 CG2 A:THR26 5.0 22.7 1.0

Chlorine binding site 7 out of 11 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound within 5.0Å range: probe atom residue distance (Å) B Occ K:Cl372 b:63.8 occ:1.00 CLZ K:ZCL372 0.0 63.8 1.0 CZ K:ZCL372 1.7 62.4 1.0 CE2 K:ZCL372 2.7 60.8 1.0 CE1 K:ZCL372 2.7 62.0 1.0 CLE1 K:ZCL372 3.2 62.5 1.0 CG D:PRO242 3.6 33.8 1.0 CD1 D:LEU155 3.6 28.8 1.0 CA D:GLY174 3.6 29.4 1.0 N D:GLY174 3.7 29.5 1.0 CD2 D:LEU155 3.8 28.9 1.0 CG2 D:THR172 3.9 28.6 1.0 CD2 K:ZCL372 4.0 60.1 1.0 CD1 K:ZCL372 4.0 61.2 1.0 O D:HOH607 4.3 55.6 1.0 NH1 D:ARG152 4.3 45.6 1.0 OG1 D:THR172 4.4 30.2 1.0 CG D:LEU155 4.4 29.2 1.0 CB D:PRO242 4.4 33.4 1.0 CG K:ZCL372 4.5 60.1 1.0 C D:ASP173 4.6 26.3 1.0 CD D:PRO242 4.7 33.1 1.0 CB D:THR172 4.8 30.1 1.0 CZ D:ARG152 4.8 47.5 1.0 C D:GLY174 5.0 31.3 1.0

Chlorine binding site 8 out of 11 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound within 5.0Å range: probe atom residue distance (Å) B Occ K:Cl372 b:62.5 occ:1.00 CLE1 K:ZCL372 0.0 62.5 1.0 CE1 K:ZCL372 1.7 62.0 1.0 CD1 K:ZCL372 2.7 61.2 1.0 CZ K:ZCL372 2.7 62.4 1.0 CLZ K:ZCL372 3.2 63.8 1.0 OG1 D:THR172 3.6 30.2 1.0 CG2 D:THR172 3.9 28.6 1.0 CB K:LEU371 3.9 35.3 1.0 CG K:ZCL372 4.0 60.1 1.0 CE2 K:ZCL372 4.0 60.8 1.0 CD1 K:LEU371 4.0 35.7 1.0 CB D:PRO242 4.1 33.4 1.0 CG D:PRO242 4.1 33.8 1.0 CG1 D:VAL247 4.1 45.3 1.0 CB D:THR172 4.2 30.1 1.0 CD2 K:ZCL372 4.5 60.1 1.0 CA D:GLY174 4.6 29.4 1.0 CD1 D:LEU177 4.6 28.1 1.0 CG K:LEU371 4.6 36.0 1.0 N D:GLY174 4.8 29.5 1.0

Chlorine binding site 9 out of 11 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl405 b:30.0 occ:1.00 O A:HOH506 3.1 43.2 1.0 N A:GLU6 3.2 30.8 1.0 NE2 A:GLN61 3.7 20.4 1.0 CG2 A:VAL60 3.7 30.3 1.0 CB A:GLU6 3.7 31.5 1.0 CD2 A:HIS9 3.7 27.4 1.0 O A:HOH547 3.8 31.1 1.0 CA A:VAL5 4.0 22.1 1.0 CA A:GLU6 4.1 31.0 1.0 CG1 A:VAL5 4.1 21.6 1.0 C A:VAL5 4.1 22.6 1.0 CG A:HIS9 4.4 27.2 1.0 CB A:VAL5 4.6 22.6 1.0 CB A:HIS9 4.6 26.4 1.0 CD A:GLN61 4.7 21.9 1.0 NE2 A:HIS9 4.7 28.6 1.0 CG A:GLN61 4.7 20.5 1.0 O A:THR4 4.7 23.0 1.0 O A:GLU6 5.0 30.8 1.0

Chlorine binding site 10 out of 11 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl405 b:36.3 occ:1.00 N B:GLU6 3.1 38.4 1.0 ND1 B:HIS9 3.2 51.0 1.0 O B:HOH502 3.2 38.9 1.0 NE2 B:GLN61 3.4 32.3 1.0 CB B:GLU6 3.7 36.9 1.0 CE1 B:HIS9 3.7 51.9 1.0 CG2 B:VAL5 3.7 29.1 0.5 CA B:VAL5 3.7 30.2 0.5 CA B:VAL5 3.8 30.1 0.5 CG1 B:VAL5 3.8 30.8 0.5 C B:VAL5 3.9 31.1 1.0 O B:HOH527 4.0 26.9 1.0 CA B:GLU6 4.0 36.1 1.0 CG B:HIS9 4.3 49.9 1.0 CB B:VAL5 4.3 29.5 0.5 CB B:VAL5 4.3 29.5 0.5 CG2 B:VAL60 4.3 37.6 1.0 CD B:GLN61 4.5 35.2 1.0 O B:THR4 4.6 33.7 1.0 CG B:GLN61 4.6 34.2 1.0 CB B:HIS9 4.7 47.7 1.0 CG2 B:VAL5 4.8 29.1 0.5 NE2 B:HIS9 4.8 52.5 1.0 N B:VAL5 4.9 29.9 1.0 OE1 B:GLU87 5.0 36.6 1.0

C.Monsarrat, G.Compain, C.Andre, I.Martiel, S.Engilberge, P.Wolff, V.Olieric, K.Brillet, M.Landolfo, C.Silva Da Veiga, J.Wagner, G.Guichard, D.Y.Burnouf. Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 35 Bound To Be Published.