Chlorine in PDB 7azl: Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound

The structure of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound, PDB code: 7azl was solved by C.Monsarrat, G.Compain, C.Andre, I.Martiel, S.Engilberge, V.Olieric, P.Wolff, K.Brillet, M.Landolfo, C.Silva Da Veiga, J.Wagner, G.Guichard, D.Y.Burnouf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.69 / 2.42
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	139.611, 86.643, 153.897, 90, 92.56, 90
R / Rfree (%)	20.8 / 23.3

The binding sites of Chlorine atom in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound (pdb code 7azl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound, PDB code: 7azl:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl407 b:100.5 occ:1.00 CLZ E:ZCL407 0.0 100.5 1.0 CZ E:ZCL407 1.7 94.7 1.0 CE2 E:ZCL407 2.7 94.3 1.0 CE1 E:ZCL407 2.7 94.0 1.0 CLE1 E:ZCL407 3.2 101.7 1.0 CD2 A:LEU155 3.4 37.3 1.0 CD1 A:LEU155 3.4 40.0 1.0 N A:GLY174 3.5 34.1 1.0 CA A:GLY174 3.6 32.5 1.0 CG A:PRO242 3.8 44.3 1.0 CG2 A:THR172 3.8 21.5 1.0 CD2 E:ZCL407 4.0 92.0 1.0 CD1 E:ZCL407 4.0 88.8 1.0 OG1 A:THR172 4.0 43.9 1.0 CG A:LEU155 4.0 39.6 1.0 C A:ASP173 4.4 37.7 1.0 O A:HOH557 4.4 41.3 1.0 NH1 A:ARG152 4.4 35.7 1.0 CG E:ZCL407 4.5 87.5 1.0 CB A:THR172 4.5 36.2 1.0 CB A:PRO242 4.6 41.6 1.0 CD A:PRO242 4.7 39.9 1.0 C A:THR172 4.8 36.9 1.0 N A:ASP173 4.9 36.3 1.0 CZ A:ARG152 4.9 59.8 1.0 O A:THR172 4.9 36.2 1.0 C A:GLY174 4.9 34.9 1.0 CA A:ASP173 5.0 35.6 1.0

Chlorine binding site 2 out of 8 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl407 b:101.7 occ:1.00 CLE1 E:ZCL407 0.0 101.7 1.0 CE1 E:ZCL407 1.7 94.0 1.0 CD1 E:ZCL407 2.7 88.8 1.0 CZ E:ZCL407 2.7 94.7 1.0 CLZ E:ZCL407 3.2 100.5 1.0 CG A:PRO242 3.8 44.3 1.0 CD1 E:LEU406 3.8 32.2 1.0 CB E:LEU406 3.9 29.2 1.0 CG2 A:THR172 3.9 21.5 1.0 CB A:PRO242 3.9 41.6 1.0 OG1 A:THR172 4.0 43.9 1.0 CG E:ZCL407 4.0 87.5 1.0 CE2 E:ZCL407 4.0 94.3 1.0 CG2 A:VAL247 4.3 41.0 1.0 CD1 A:LEU177 4.3 39.3 1.0 CG1 A:VAL247 4.4 44.5 1.0 CD2 E:ZCL407 4.5 92.0 1.0 CB A:THR172 4.5 36.2 1.0 CG E:LEU406 4.5 30.2 1.0 CB A:VAL247 4.9 43.7 1.0

Chlorine binding site 3 out of 8 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl407 b:98.6 occ:1.00 CLZ G:ZCL407 0.0 98.6 1.0 CZ G:ZCL407 1.7 82.6 1.0 CE2 G:ZCL407 2.7 77.1 1.0 CE1 G:ZCL407 2.7 76.1 1.0 CLE1 G:ZCL407 3.2 76.4 1.0 N B:GLY174 3.3 40.6 1.0 CD2 B:LEU155 3.4 31.6 1.0 CA B:GLY174 3.5 41.3 1.0 CD1 B:LEU155 3.5 41.8 1.0 CG2 B:THR172 3.6 38.3 1.0 OG1 B:THR172 3.8 60.7 1.0 CG B:PRO242 3.9 63.0 1.0 CD2 G:ZCL407 4.0 74.7 1.0 CD1 G:ZCL407 4.0 73.5 1.0 CG B:LEU155 4.1 40.5 1.0 C B:ASP173 4.2 42.2 1.0 CB B:THR172 4.3 49.7 1.0 CG G:ZCL407 4.5 76.5 1.0 NH1 B:ARG152 4.5 79.2 1.0 N B:ASP173 4.7 35.3 1.0 C B:THR172 4.7 35.6 1.0 CB B:PRO242 4.7 61.8 1.0 C B:GLY174 4.8 49.3 1.0 O B:THR172 4.8 31.7 1.0 CA B:ASP173 4.8 38.4 1.0 CD B:PRO242 4.9 57.0 1.0 CZ B:ARG152 5.0 75.6 1.0 O B:ASP173 5.0 38.2 1.0

Chlorine binding site 4 out of 8 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl407 b:76.4 occ:1.00 CLE1 G:ZCL407 0.0 76.4 1.0 CE1 G:ZCL407 1.7 76.1 1.0 CD1 G:ZCL407 2.7 73.5 1.0 CZ G:ZCL407 2.7 82.6 1.0 CLZ G:ZCL407 3.2 98.6 1.0 OG1 B:THR172 3.6 60.7 1.0 CG2 B:VAL247 3.7 62.9 1.0 CG2 B:THR172 3.8 38.3 1.0 CD1 G:LEU406 3.8 47.9 1.0 CB G:LEU406 3.9 43.8 1.0 CD1 B:LEU177 3.9 48.9 1.0 CG G:ZCL407 4.0 76.5 1.0 CE2 G:ZCL407 4.0 77.1 1.0 CG B:PRO242 4.0 63.0 1.0 CB B:THR172 4.2 49.7 1.0 CB B:PRO242 4.2 61.8 1.0 CD2 G:ZCL407 4.5 74.7 1.0 CG G:LEU406 4.5 47.0 1.0 CG1 B:VAL247 4.7 62.4 1.0 CB B:VAL247 4.7 63.1 1.0 CA B:GLY174 5.0 41.3 1.0

Chlorine binding site 5 out of 8 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl406 b:85.2 occ:1.00 CLZ F:ZCL406 0.0 85.2 1.0 CZ F:ZCL406 1.7 79.9 1.0 CE2 F:ZCL406 2.7 77.2 1.0 CE1 F:ZCL406 2.7 81.1 1.0 CLE1 F:ZCL406 3.2 86.2 1.0 CD2 C:LEU155 3.6 41.3 1.0 CD1 C:LEU155 3.6 41.0 1.0 CA C:GLY174 3.7 33.9 1.0 CG C:PRO242 3.8 62.3 1.0 N C:GLY174 3.8 35.2 1.0 CD2 F:ZCL406 4.0 72.2 1.0 CD1 F:ZCL406 4.0 74.6 1.0 CG2 C:THR172 4.1 30.5 1.0 NH1 C:ARG152 4.2 40.1 1.0 CG C:LEU155 4.3 44.3 1.0 OG1 C:THR172 4.3 41.4 1.0 CB C:PRO242 4.5 60.3 1.0 CG F:ZCL406 4.5 71.8 1.0 C C:ASP173 4.6 39.3 1.0 OD2 F:SOQ404 4.8 54.9 1.0 CZ C:ARG152 4.8 45.2 1.0 CD C:PRO242 4.8 58.0 1.0 CB C:THR172 4.9 46.2 1.0 C C:GLY174 5.0 43.4 1.0

Chlorine binding site 6 out of 8 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl406 b:86.2 occ:1.00 CLE1 F:ZCL406 0.0 86.2 1.0 CE1 F:ZCL406 1.7 81.1 1.0 CD1 F:ZCL406 2.7 74.6 1.0 CZ F:ZCL406 2.7 79.9 1.0 CLZ F:ZCL406 3.2 85.2 1.0 CD1 F:LEU405 3.8 50.1 1.0 CG1 C:VAL247 3.9 59.4 1.0 CB F:LEU405 3.9 50.0 1.0 CG C:PRO242 3.9 62.3 1.0 OG1 C:THR172 4.0 41.4 1.0 CG F:ZCL406 4.0 71.8 1.0 CE2 F:ZCL406 4.0 77.2 1.0 CG2 C:THR172 4.0 30.5 1.0 CB C:PRO242 4.0 60.3 1.0 CD1 C:LEU177 4.3 35.6 1.0 CD2 F:ZCL406 4.5 72.2 1.0 CG F:LEU405 4.5 51.7 1.0 CB C:THR172 4.5 46.2 1.0 CG2 C:VAL247 4.7 59.3 1.0 CB C:VAL247 4.8 59.8 1.0

Chlorine binding site 7 out of 8 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl407 b:82.3 occ:1.00 CLZ H:ZCL407 0.0 82.3 1.0 CZ H:ZCL407 1.7 75.3 1.0 CE2 H:ZCL407 2.7 72.6 1.0 CE1 H:ZCL407 2.7 68.6 1.0 CLE1 H:ZCL407 3.2 72.1 1.0 CD2 D:LEU155 3.6 25.6 1.0 CA D:GLY174 3.6 37.8 1.0 CD1 D:LEU155 3.6 31.4 1.0 N D:GLY174 3.7 36.5 1.0 CG D:PRO242 3.7 48.2 1.0 CG2 D:THR172 3.9 20.8 1.0 CD2 H:ZCL407 4.0 67.4 1.0 CD1 H:ZCL407 4.0 66.2 1.0 OG1 D:THR172 4.2 28.3 1.0 O D:HOH539 4.2 40.4 1.0 CG D:LEU155 4.2 32.0 1.0 NH1 D:ARG152 4.4 56.5 1.0 CB D:PRO242 4.5 45.3 1.0 CG H:ZCL407 4.5 66.2 1.0 C D:ASP173 4.5 35.3 1.0 CB D:THR172 4.7 29.9 1.0 CD D:PRO242 4.8 41.8 1.0 CZ D:ARG152 4.9 64.9 1.0 C D:GLY174 4.9 40.5 1.0

Chlorine binding site 8 out of 8 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl407 b:72.1 occ:1.00 CLE1 H:ZCL407 0.0 72.1 1.0 CE1 H:ZCL407 1.7 68.6 1.0 CD1 H:ZCL407 2.7 66.2 1.0 CZ H:ZCL407 2.7 75.3 1.0 CLZ H:ZCL407 3.2 82.3 1.0 CD1 H:LEU406 3.8 32.6 1.0 CG2 D:VAL247 3.8 55.6 1.0 CB H:LEU406 3.9 36.3 1.0 CG2 D:THR172 3.9 20.8 1.0 OG1 D:THR172 3.9 28.3 1.0 CG D:PRO242 3.9 48.2 1.0 CG H:ZCL407 4.0 66.2 1.0 CE2 H:ZCL407 4.0 72.6 1.0 CB D:PRO242 4.1 45.3 1.0 CD1 D:LEU177 4.1 37.6 1.0 CB D:THR172 4.5 29.9 1.0 CD2 H:ZCL407 4.5 67.4 1.0 CG H:LEU406 4.5 33.5 1.0 CB D:VAL247 4.7 55.9 1.0 CG1 D:VAL247 4.9 56.5 1.0

C.Monsarrat, G.Compain, C.Andre, I.Martiel, S.Engilberge, V.Olieric, P.Wolff, K.Brillet, M.Landolfo, C.Silva Da Veiga, J.Wagner, G.Guichard, D.Y.Burnouf. Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 38 Bound To Be Published.