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Chlorine in PDB 7b6b: The Carbohydrate Binding Module Family 48 (CBM48) and Carboxy-Terminal Carbohydrate Esterase Family 1 (CE1) Domains of the Multidomain Esterase DMCE1B From Dysgonomonas Mossii in Complex with Methyl Ferulate

Protein crystallography data

The structure of The Carbohydrate Binding Module Family 48 (CBM48) and Carboxy-Terminal Carbohydrate Esterase Family 1 (CE1) Domains of the Multidomain Esterase DMCE1B From Dysgonomonas Mossii in Complex with Methyl Ferulate, PDB code: 7b6b was solved by S.Mazurkewich, C.Kmezik, G.Branden, J.Larsbrink, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.90 / 1.41
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.258, 50.511, 90.148, 90, 100.14, 90
R / Rfree (%) 16.1 / 17.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Carbohydrate Binding Module Family 48 (CBM48) and Carboxy-Terminal Carbohydrate Esterase Family 1 (CE1) Domains of the Multidomain Esterase DMCE1B From Dysgonomonas Mossii in Complex with Methyl Ferulate (pdb code 7b6b). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The Carbohydrate Binding Module Family 48 (CBM48) and Carboxy-Terminal Carbohydrate Esterase Family 1 (CE1) Domains of the Multidomain Esterase DMCE1B From Dysgonomonas Mossii in Complex with Methyl Ferulate, PDB code: 7b6b:

Chlorine binding site 1 out of 1 in 7b6b

Go back to Chlorine Binding Sites List in 7b6b
Chlorine binding site 1 out of 1 in the The Carbohydrate Binding Module Family 48 (CBM48) and Carboxy-Terminal Carbohydrate Esterase Family 1 (CE1) Domains of the Multidomain Esterase DMCE1B From Dysgonomonas Mossii in Complex with Methyl Ferulate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Carbohydrate Binding Module Family 48 (CBM48) and Carboxy-Terminal Carbohydrate Esterase Family 1 (CE1) Domains of the Multidomain Esterase DMCE1B From Dysgonomonas Mossii in Complex with Methyl Ferulate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl703

b:21.9
occ:1.00
OG A:SER542 2.9 13.7 0.7
OG A:SER542 3.1 12.4 0.3
O A:HOH1032 3.1 26.6 1.0
O A:HOH877 3.1 37.6 1.0
N A:GLY450 3.1 13.1 1.0
N A:MET543 3.3 11.6 1.0
CA A:GLY450 3.4 13.0 1.0
CB A:SER542 3.5 13.2 0.7
CB A:SER542 3.5 13.2 0.3
CB A:MET543 3.5 15.4 1.0
O A:HOH1005 3.9 18.0 1.0
CA A:MET543 3.9 13.3 1.0
CZ A:PHE506 3.9 51.8 1.0
C A:SER542 4.2 12.0 0.3
C A:SER542 4.3 12.0 0.7
C A:GLY449 4.4 12.6 1.0
CE1 A:PHE506 4.4 49.7 1.0
C A:GLY450 4.4 12.1 1.0
CA A:SER542 4.4 12.4 0.7
CA A:SER542 4.5 12.4 0.3
O A:GLY450 4.5 14.4 1.0
CE2 A:PHE506 4.6 36.6 1.0
CA A:GLY449 4.7 12.2 1.0
CG A:MET543 4.8 15.1 1.0

Reference:

C.Kmezik, S.Mazurkewich, T.Meents, L.S.Mckee, A.Idstrom, M.Armeni, O.Savolainen, G.Branden, J.Larsbrink. A Polysaccharide Utilization Locus From the Gut Bacterium Dysgonomonas Mossii Encodes Functionally Distinct Carbohydrate Esterases J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X
DOI: 10.1016/J.JBC.2021.100500
Page generated: Mon Jul 29 19:01:00 2024

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