Chlorine in PDB 7b7n: Human Herpesvirus-8 Gh/Gl in Complex with EPHA2

All present enzymatic activity of Human Herpesvirus-8 Gh/Gl in Complex with EPHA2:
2.7.10.1;

The structure of Human Herpesvirus-8 Gh/Gl in Complex with EPHA2, PDB code: 7b7n was solved by R.Pederzoli, P.Guardado-Calvo, F.A.Rey, M.Backovic, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.44 / 2.69
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	72.94, 129, 267.69, 90, 90, 90
R / Rfree (%)	22.3 / 26.5

The structure of Human Herpesvirus-8 Gh/Gl in Complex with EPHA2 also contains other interesting chemical elements:

Sodium

(Na)

10 atoms

The binding sites of Chlorine atom in the Human Herpesvirus-8 Gh/Gl in Complex with EPHA2 (pdb code 7b7n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Human Herpesvirus-8 Gh/Gl in Complex with EPHA2, PDB code: 7b7n:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Human Herpesvirus-8 Gh/Gl in Complex with EPHA2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Herpesvirus-8 Gh/Gl in Complex with EPHA2 within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl301 b:83.1 occ:1.00 O E:GLY39 3.2 69.3 1.0 CD2 E:LEU54 3.8 50.9 1.0 N E:GLY42 3.9 54.4 1.0 CA E:GLY42 3.9 44.6 1.0 C E:LEU41 4.1 54.9 1.0 C E:GLY39 4.3 65.8 1.0 N E:LEU41 4.3 53.2 1.0 O E:LEU41 4.3 53.8 1.0 C E:GLU40 4.4 56.8 1.0 CA E:GLU40 4.6 68.3 1.0 CA E:LEU41 4.8 52.6 1.0 CD1 L:ILE69 4.9 52.2 1.0 N E:GLU40 4.9 69.2 1.0 O E:GLU40 4.9 53.1 1.0

Chlorine binding site 2 out of 4 in the Human Herpesvirus-8 Gh/Gl in Complex with EPHA2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Herpesvirus-8 Gh/Gl in Complex with EPHA2 within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl302 b:86.6 occ:1.00 N E:TYR65 2.9 55.6 1.0 O E:TYR65 3.2 54.1 1.0 CA E:TYR65 3.6 49.9 1.0 O E:ALA35 3.6 52.1 1.0 CA E:ALA35 3.7 52.8 1.0 C E:TYR65 3.7 51.1 1.0 CB E:TYR65 3.8 45.4 1.0 C E:ILE64 3.8 56.0 1.0 CA E:ILE64 3.9 59.0 1.0 C E:ALA35 4.1 52.5 1.0 CB E:ALA35 4.2 48.4 1.0 CD1 E:TYR65 4.3 52.9 1.0 CG2 E:ILE64 4.3 51.1 1.0 O E:LEU192 4.3 57.1 1.0 CB E:ILE64 4.5 58.5 1.0 CG E:TYR65 4.5 51.7 1.0 O E:PHE34 4.6 61.2 1.0 CE2 E:PHE34 4.6 57.8 1.0 CG1 E:ILE64 4.7 68.6 1.0 O E:HOH403 4.8 53.0 1.0 N E:ALA35 4.8 61.6 1.0 O E:PRO63 4.8 58.9 1.0 CD2 E:PHE34 4.9 55.4 1.0 O E:ILE64 5.0 52.1 1.0 N E:MET66 5.0 60.4 1.0

Chlorine binding site 3 out of 4 in the Human Herpesvirus-8 Gh/Gl in Complex with EPHA2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Human Herpesvirus-8 Gh/Gl in Complex with EPHA2 within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl303 b:101.1 occ:1.00 N E:ASP104 2.9 54.5 1.0 CB E:ASP104 3.5 71.9 1.0 CA E:ARG103 3.7 54.9 1.0 C E:ARG103 3.7 52.3 1.0 CA E:ASP104 3.8 62.0 1.0 O E:VAL102 3.8 64.9 1.0 O L:HOH417 3.9 46.5 1.0 CG E:ARG103 4.2 56.8 1.0 CB E:ARG103 4.5 54.7 1.0 N E:ARG103 4.7 58.5 1.0 C E:VAL102 4.7 59.8 1.0 CG E:ASP104 4.9 84.8 1.0 O E:ARG103 4.9 48.2 1.0 C E:ASP104 5.0 64.7 1.0

Chlorine binding site 4 out of 4 in the Human Herpesvirus-8 Gh/Gl in Complex with EPHA2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Human Herpesvirus-8 Gh/Gl in Complex with EPHA2 within 5.0Å range: probe atom residue distance (Å) B Occ L:Cl302 b:98.7 occ:1.00 NE L:ARG101 3.6 82.8 1.0 CB L:ARG101 3.8 65.5 1.0 CE1 H:PHE58 3.9 56.0 1.0 CG L:ARG101 4.1 73.3 1.0 NH2 L:ARG101 4.2 79.9 1.0 CZ L:ARG101 4.4 82.9 1.0 CZ H:PHE58 4.4 56.6 1.0 CD L:ARG101 4.4 78.9 1.0 CD1 H:PHE58 5.0 56.0 1.0

M.Backovic, R.Pederzoli, F.A.Rey. Human Herpesvirus-8 Gh/Gl in Complex with EPHA2 To Be Published.