Atomistry » Chlorine » PDB 7bar-7bhm » 7bcu
Atomistry »
  Chlorine »
    PDB 7bar-7bhm »
      7bcu »

Chlorine in PDB 7bcu: The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.

Enzymatic activity of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.

All present enzymatic activity of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.:
3.2.1.17;

Protein crystallography data

The structure of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours., PDB code: 7bcu was solved by L.Chiniadis, P.Giastas, I.Bratsos, A.Papakyriakou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.02 / 0.98
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.419, 77.419, 37.643, 90, 90, 90
R / Rfree (%) 12.7 / 14.4

Other elements in 7bcu:

The structure of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. also contains other interesting chemical elements:

Sodium (Na) 5 atoms
Ruthenium (Ru) 3 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 21;

Binding sites:

The binding sites of Chlorine atom in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. (pdb code 7bcu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 21 binding sites of Chlorine where determined in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours., PDB code: 7bcu:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 21 in 7bcu

Go back to Chlorine Binding Sites List in 7bcu
Chlorine binding site 1 out of 21 in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:9.1
occ:0.73
RU A:RU207 2.3 8.2 0.7
N1 A:IMD201 3.2 8.1 0.7
S A:DMS202 3.3 9.9 0.7
C5 A:IMD201 3.3 8.7 0.7
CL A:CL206 3.3 9.5 0.7
CL A:CL204 3.3 7.8 0.7
C2 A:DMS202 3.4 10.7 0.7
C1 A:DMS202 3.6 10.9 0.7
C4 A:IMD208 3.6 8.0 0.7
C5 A:IMD208 4.1 7.8 0.7
C2 A:IMD201 4.3 8.0 0.7
C4 A:IMD201 4.5 8.9 0.7
O A:DMS202 4.7 10.6 0.7
CL A:CL205 4.7 8.6 0.7
N3 A:IMD208 4.8 8.0 0.7

Chlorine binding site 2 out of 21 in 7bcu

Go back to Chlorine Binding Sites List in 7bcu
Chlorine binding site 2 out of 21 in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:7.8
occ:0.73
RU A:RU207 2.3 8.2 0.7
N1 A:IMD201 3.1 8.1 0.7
C2 A:IMD201 3.3 8.0 0.7
S A:DMS202 3.3 9.9 0.7
CL A:CL203 3.3 9.1 0.7
CL A:CL205 3.3 8.6 0.7
C2 A:DMS202 3.4 10.7 0.7
N A:ARG5 3.5 8.7 1.0
C4 A:IMD208 3.6 8.0 0.7
CB A:ARG5 3.9 9.8 1.0
CL A:CL220 3.9 9.7 0.8
O A:DMS202 3.9 10.6 0.7
N3 A:IMD208 4.0 8.0 0.7
C5 A:IMD215 4.0 9.0 0.8
CA A:GLY4 4.0 8.8 1.0
CE2 A:PHE38 4.1 6.9 1.0
C A:GLY4 4.2 8.3 1.0
C5 A:IMD201 4.2 8.7 0.7
CA A:ARG5 4.2 9.0 1.0
CD2 A:PHE38 4.3 6.6 1.0
O A:PHE3 4.4 7.5 1.0
N3 A:IMD201 4.4 8.7 0.7
C4 A:IMD215 4.5 9.8 0.8
CL A:CL206 4.7 9.5 0.7
C5 A:IMD208 4.8 7.8 0.7
N1 A:IMD215 4.8 8.8 0.8
C4 A:IMD201 4.9 8.9 0.7
C1 A:DMS202 4.9 10.9 0.7

Chlorine binding site 3 out of 21 in 7bcu

Go back to Chlorine Binding Sites List in 7bcu
Chlorine binding site 3 out of 21 in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:8.6
occ:0.73
RU A:RU207 2.4 8.2 0.7
N1 A:IMD201 3.2 8.1 0.7
O A:DMS202 3.2 10.6 0.7
CL A:CL206 3.3 9.5 0.7
NZ A:LYS33 3.3 10.3 1.0
CL A:CL204 3.3 7.8 0.7
S A:DMS202 3.4 9.9 0.7
C2 A:IMD201 3.4 8.0 0.7
O A:HOH450 3.6 27.6 1.0
CE2 A:PHE38 3.6 6.9 1.0
O A:HOH364 3.7 28.3 1.0
CE A:LYS33 3.8 9.8 1.0
CD A:LYS33 3.9 8.7 1.0
CD A:ARG5 4.2 10.6 1.0
CZ A:PHE38 4.2 6.4 1.0
CZ3 A:TRP123 4.2 11.0 1.0
CB A:ARG5 4.3 9.8 1.0
C5 A:IMD201 4.4 8.7 0.7
CD2 A:PHE38 4.5 6.6 1.0
CG A:ARG5 4.6 10.2 1.0
C1 A:DMS202 4.6 10.9 0.7
N3 A:IMD201 4.7 8.7 0.7
CL A:CL203 4.7 9.1 0.7
NE A:ARG5 4.7 10.7 1.0
C2 A:DMS202 4.8 10.7 0.7
CE3 A:TRP123 4.9 9.7 1.0

Chlorine binding site 4 out of 21 in 7bcu

Go back to Chlorine Binding Sites List in 7bcu
Chlorine binding site 4 out of 21 in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:9.5
occ:0.73
RU A:RU207 2.4 8.2 0.7
N1 A:IMD201 3.2 8.1 0.7
CL A:CL205 3.3 8.6 0.7
C1 A:DMS202 3.3 10.9 0.7
CL A:CL203 3.3 9.1 0.7
O A:HOH450 3.4 27.6 1.0
S A:DMS202 3.4 9.9 0.7
O A:HOH357 3.4 33.5 1.0
C5 A:IMD201 3.5 8.7 0.7
NZ A:LYS33 3.5 10.3 1.0
O A:HOH480 4.0 37.1 1.0
O A:DMS202 4.2 10.6 0.7
C2 A:IMD201 4.3 8.0 0.7
CE A:LYS33 4.6 9.8 1.0
O A:HOH414 4.6 30.5 1.0
O A:HOH364 4.6 28.3 1.0
CL A:CL204 4.7 7.8 0.7
C4 A:IMD201 4.8 8.9 0.7
C2 A:DMS202 4.9 10.7 0.7
O A:HOH439 5.0 37.0 1.0

Chlorine binding site 5 out of 21 in 7bcu

Go back to Chlorine Binding Sites List in 7bcu
Chlorine binding site 5 out of 21 in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl210

b:10.1
occ:0.73
RU A:RU214 2.4 7.6 0.7
N1 A:IMD208 3.1 7.6 0.7
CL A:CL213 3.3 9.7 0.7
O A:HOH384 3.3 18.2 1.0
C1 A:DMS209 3.3 9.5 0.7
S A:DMS209 3.3 8.3 0.7
C2 A:IMD208 3.4 7.2 0.7
CL A:CL211 3.4 9.5 0.7
CB A:VAL2 3.8 8.3 1.0
O A:DMS209 4.1 9.1 0.7
O A:VAL2 4.2 7.5 1.0
CG2 A:VAL2 4.2 9.0 1.0
C5 A:IMD208 4.3 7.8 0.7
CG1 A:VAL2 4.5 9.3 1.0
N3 A:IMD208 4.6 8.0 0.7
CA A:VAL2 4.7 7.4 1.0
CL A:CL212 4.7 8.3 0.7
N A:VAL2 4.8 8.0 1.0
C2 A:DMS209 4.9 9.0 0.7
C A:VAL2 4.9 7.0 1.0

Chlorine binding site 6 out of 21 in 7bcu

Go back to Chlorine Binding Sites List in 7bcu
Chlorine binding site 6 out of 21 in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:9.5
occ:0.73
RU A:RU214 2.4 7.6 0.7
N1 A:IMD208 3.1 7.6 0.7
S A:DMS209 3.3 8.3 0.7
C2 A:IMD208 3.3 7.2 0.7
CL A:CL210 3.4 10.1 0.7
CL A:CL212 3.4 8.3 0.7
O A:HOH382 3.4 27.7 1.0
C2 A:DMS209 3.4 9.0 0.7
O A:HOH466 3.6 39.0 1.0
C1 A:DMS209 3.6 9.5 0.7
N3 A:IMD215 3.7 10.4 0.8
O A:HOH344 3.8 25.2 1.0
C4 A:IMD215 3.9 9.8 0.8
O A:VAL2 4.2 7.5 1.0
C5 A:IMD208 4.2 7.8 0.7
N3 A:IMD208 4.5 8.0 0.7
O A:HOH384 4.6 18.2 1.0
O A:DMS209 4.7 9.1 0.7
CL A:CL213 4.8 9.7 0.7
C4 A:IMD208 5.0 8.0 0.7

Chlorine binding site 7 out of 21 in 7bcu

Go back to Chlorine Binding Sites List in 7bcu
Chlorine binding site 7 out of 21 in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:8.3
occ:0.73
RU A:RU214 2.4 7.6 0.7
N1 A:IMD208 3.1 7.6 0.7
C5 A:IMD208 3.3 7.8 0.7
CL A:CL213 3.3 9.7 0.7
S A:DMS209 3.3 8.3 0.7
C2 A:DMS209 3.4 9.0 0.7
CL A:CL211 3.4 9.5 0.7
O A:DMS209 3.9 9.1 0.7
C4 A:IMD215 4.3 9.8 0.8
C2 A:IMD208 4.3 7.2 0.7
C4 A:IMD208 4.5 8.0 0.7
CL A:CL210 4.7 10.1 0.7
N3 A:IMD215 4.9 10.4 0.8
C1 A:DMS209 4.9 9.5 0.7
N3 A:IMD208 5.0 8.0 0.7

Chlorine binding site 8 out of 21 in 7bcu

Go back to Chlorine Binding Sites List in 7bcu
Chlorine binding site 8 out of 21 in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl213

b:9.7
occ:0.73
RU A:RU214 2.4 7.6 0.7
N1 A:IMD208 3.2 7.6 0.7
O A:DMS209 3.3 9.1 0.7
CL A:CL212 3.3 8.3 0.7
CL A:CL210 3.3 10.1 0.7
S A:DMS209 3.4 8.3 0.7
C5 A:IMD208 3.5 7.8 0.7
C2 A:IMD208 4.3 7.2 0.7
C1 A:DMS209 4.7 9.5 0.7
C4 A:IMD208 4.7 8.0 0.7
CL A:CL211 4.8 9.5 0.7
C2 A:DMS209 4.8 9.0 0.7

Chlorine binding site 9 out of 21 in 7bcu

Go back to Chlorine Binding Sites List in 7bcu
Chlorine binding site 9 out of 21 in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl217

b:9.9
occ:0.75
RU A:RU221 2.4 8.1 0.8
N1 A:IMD215 3.1 8.8 0.8
NA A:NA225 3.3 39.9 0.9
S A:DMS216 3.3 9.0 0.8
C5 A:IMD215 3.3 9.0 0.8
CL A:CL220 3.4 9.7 0.8
CL A:CL218 3.4 9.7 0.8
C2 A:DMS216 3.4 9.9 0.8
C1 A:DMS216 3.6 10.2 0.8
C2 A:DMS202 3.8 10.7 0.7
C2 A:IMD215 4.3 9.8 0.8
C4 A:IMD215 4.6 9.8 0.8
O A:DMS216 4.7 9.6 0.8
CL A:CL219 4.7 8.2 0.8

Chlorine binding site 10 out of 21 in 7bcu

Go back to Chlorine Binding Sites List in 7bcu
Chlorine binding site 10 out of 21 in the The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of The Adduct of Nami-A with Hen Egg White Lysozyme at 1.5 Hours. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:9.7
occ:0.75
RU A:RU221 2.4 8.1 0.8
N1 A:IMD215 3.2 8.8 0.8
S A:DMS216 3.3 9.0 0.8
C2 A:IMD215 3.4 9.8 0.8
CL A:CL219 3.4 8.2 0.8
C2 A:DMS216 3.4 9.9 0.8
CL A:CL217 3.4 9.9 0.8
O A:HOH304 3.8 29.5 1.0
O A:HOH491 3.9 32.0 1.0
O A:DMS216 3.9 9.6 0.8
C5 A:IMD215 4.3 9.0 0.8
N3 A:IMD215 4.5 10.4 0.8
CL A:CL220 4.7 9.7 0.8
C1 A:DMS216 4.9 10.2 0.8

Reference:

L.Chiniadis, P.Giastas, I.Bratsos, A.Papakyriakou. Insights Into the Protein Ruthenation Mechanism By Antimetastatic Metallodrugs: High-Resolution X-Ray Structures of the Adduct Formed Between Hen Egg-White Lysozyme and Nami-A at Various Time Points. Inorg.Chem. V. 60 10729 2021.
ISSN: ISSN 0020-1669
PubMed: 34197115
DOI: 10.1021/ACS.INORGCHEM.1C01441
Page generated: Sat Jul 12 23:12:05 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy