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Chlorine in PDB 7bhm: Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine.

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine.

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine.:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine., PDB code: 7bhm was solved by A.Butryn, A.M.Orville, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.23 / 1.45
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.804, 78.804, 38.002, 90, 90, 90
R / Rfree (%) 19.2 / 22

Other elements in 7bhm:

The structure of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine. also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine. (pdb code 7bhm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine., PDB code: 7bhm:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7bhm

Go back to Chlorine Binding Sites List in 7bhm
Chlorine binding site 1 out of 4 in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:27.9
occ:1.00
 OH A:TYR23 3.0 20.9 1.0
O A:HOH338 3.4 30.5 1.0
CE2 A:TYR23 3.7 19.4 1.0
CZ A:TYR23 3.7 19.3 1.0
CA A:GLY104 4.1 20.9 1.0
O A:ARG21 4.6 30.1 1.0
O A:HOH310 4.6 35.6 1.0
N A:GLY104 4.7 20.6 1.0
CE1 A:TYR23 4.9 18.9 1.0
CD2 A:TYR23 4.9 21.0 1.0

Chlorine binding site 2 out of 4 in 7bhm

Go back to Chlorine Binding Sites List in 7bhm
Chlorine binding site 2 out of 4 in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:37.7
occ:1.00
 OG A:SER24 3.0 28.9 1.0
N A:GLY26 3.1 21.1 1.0
CB A:SER24 3.4 27.9 1.0
CA A:GLY26 3.5 20.1 1.0
CA A:GLN121 3.6 30.4 1.0
CD1 A:ILE124 3.6 38.9 1.0
N A:GLN121 3.9 29.3 1.0
N A:LEU25 4.0 22.5 1.0
CB A:GLN121 4.0 33.3 1.0
CG1 A:ILE124 4.2 30.3 1.0
C A:SER24 4.2 23.9 1.0
C A:LEU25 4.3 21.7 1.0
O A:VAL120 4.3 25.5 1.0
C A:VAL120 4.3 27.1 1.0
CG A:GLN121 4.3 40.9 1.0
CG2 A:VAL120 4.3 26.9 1.0
CA A:SER24 4.5 24.1 1.0
C A:GLY26 4.6 21.4 1.0
CA A:LEU25 4.6 21.2 1.0
N A:ASN27 4.7 17.3 1.0
O A:SER24 4.7 21.3 1.0
C A:GLN121 4.9 27.0 1.0
CB A:LEU25 4.9 24.3 1.0

Chlorine binding site 3 out of 4 in 7bhm

Go back to Chlorine Binding Sites List in 7bhm
Chlorine binding site 3 out of 4 in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:43.7
occ:1.00
 O A:HOH344 3.1 30.4 1.0
O A:THR69 3.1 31.3 1.0
N A:THR69 3.2 24.1 1.0
C A:THR69 3.5 23.1 1.0
OD1 A:ASN65 3.5 32.4 1.0
N A:ARG68 3.5 23.3 0.6
N A:ARG68 3.5 23.3 0.4
C A:GLY67 3.6 28.1 1.0
CA A:GLY67 3.7 26.6 1.0
N A:GLY67 3.7 24.3 1.0
CA A:THR69 3.8 22.1 1.0
OG A:SER72 3.9 31.0 1.0
O A:HOH369 4.1 32.2 1.0
C A:ARG68 4.2 25.2 0.6
CB A:THR69 4.2 26.0 1.0
C A:ARG68 4.2 25.2 0.4
N A:PRO70 4.3 26.1 1.0
OD1 A:ASP66 4.3 21.7 1.0
CA A:ARG68 4.3 25.1 0.6
O A:GLY67 4.3 35.0 1.0
CA A:ARG68 4.3 25.1 0.4
CA A:PRO70 4.6 30.1 1.0
CG A:ASN65 4.7 28.9 1.0
OG1 A:THR69 4.8 23.9 1.0
C A:ASP66 4.8 24.6 1.0
N A:ASP66 4.8 21.1 1.0
NA A:NA206 4.8 27.1 1.0

Chlorine binding site 4 out of 4 in 7bhm

Go back to Chlorine Binding Sites List in 7bhm
Chlorine binding site 4 out of 4 in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.7 S Mixing with N-Acetyl-D-Glucosamine. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:52.1
occ:1.00
 N A:ILE88 3.2 25.8 1.0
CG1 A:ILE88 3.6 29.7 1.0
OD1 A:ASP87 3.6 36.9 1.0
CA A:ASP87 3.7 25.1 1.0
O A:HOH312 3.8 43.8 1.0
O A:HOH307 3.8 52.0 1.0
CE1 A:HIS15 3.9 39.9 1.0
C A:ASP87 4.0 27.6 1.0
O A:SER86 4.0 31.8 0.4
O A:SER86 4.1 31.9 0.6
NH2 A:ARG14 4.2 59.0 1.0
CA A:ILE88 4.2 21.1 1.0
CB A:ILE88 4.2 22.7 1.0
CG2 A:ILE88 4.3 26.4 1.0
CG A:ASP87 4.4 38.0 1.0
CD1 A:ILE88 4.5 31.9 1.0
CB A:ALA11 4.5 26.5 1.0
CB A:ASP87 4.6 31.8 1.0
CZ A:PHE3 4.6 33.4 1.0
NE2 A:HIS15 4.7 38.1 1.0
ND1 A:HIS15 4.7 33.3 1.0
N A:ASP87 4.8 28.0 1.0
N A:THR89 4.8 25.0 1.0
C A:SER86 4.8 27.6 0.4
C A:SER86 4.8 27.5 0.6
C A:ILE88 4.9 23.3 1.0

Reference:

A.Butryn, P.S.Simon, P.Aller, P.Hinchliffe, R.N.Massad, G.Leen, C.L.Tooke, I.Bogacz, I.-S.Kim, A.Bhowmick, A.S.Brewster, N.E.Devenish, J.Brem, J.J.A.G.Kamps, P.A.Lang, P.Rabe, D.Axford, J.H.Beale, B.Davy, A.Ebrahim, J.Orlans, S.L.S.Storm, T.Zhou, S.Owada, R.Tanaka, K.Tono, G.Evans, R.L.Owen, F.A.Houle, N.K.Sauter, C.J.Schofield, J.Spencer, V.K.Yachandra, J.Yano, J.F.Kern, A.M.Orville. An on-Demand, Drop-on-Drop Method For Studying Enzyme Catalysis By Serial Crystallography. To Be Published.
Page generated: Mon Jul 29 19:12:52 2024

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