Chlorine in PDB 7brd: Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae

All present enzymatic activity of Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae:
3.1.1.29;

The structure of Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae, PDB code: 7brd was solved by S.Mundra, M.Zohib, R.K.Pal, B.K.Biswal, A.Arora, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.21 / 1.89
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	70.203, 72.372, 77.415, 90, 90, 90
R / Rfree (%)	17.4 / 22.2

The binding sites of Chlorine atom in the Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae (pdb code 7brd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae, PDB code: 7brd:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl713 b:17.7 occ:1.00 OD1 A:ASN115 3.3 20.7 1.0 O A:HOH926 3.3 21.7 1.0 ND2 A:ASN11 3.4 14.4 1.0 CD2 A:HIS21 3.6 18.4 0.5 CD2 A:HIS21 3.7 15.4 0.5 NE2 A:HIS21 3.9 18.7 0.5 NE2 A:HIS21 4.1 15.6 0.5 CD2 A:LEU151 4.1 15.7 1.0 CB A:MET68 4.2 16.1 1.0 OD1 A:ASN11 4.2 14.4 1.0 CG A:ASN11 4.2 14.2 1.0 CG A:ASN115 4.2 17.7 1.0 ND2 A:ASN115 4.3 15.9 1.0 CD1 A:LEU151 4.4 16.9 1.0 CG A:LEU151 4.7 16.6 1.0 CG A:MET68 4.8 16.3 1.0 CG A:HIS21 4.8 18.4 0.5 O A:HOH928 4.9 22.4 1.0 CG A:HIS21 5.0 15.3 0.5

Chlorine binding site 2 out of 4 in the Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl714 b:34.8 occ:1.00 N A:GLY148 3.4 18.0 1.0 O A:HOH878 3.6 30.7 1.0 CA A:LYS145 3.7 28.7 1.0 CA A:GLY148 3.9 19.0 1.0 C A:LYS145 4.0 26.5 1.0 O A:LYS145 4.1 24.8 1.0 CB A:LYS145 4.2 31.9 1.0 N A:VAL147 4.3 20.8 1.0 O A:ASN144 4.3 37.6 1.0 C A:VAL147 4.4 18.8 1.0 CB A:VAL147 4.4 20.9 1.0 CA A:VAL147 4.6 19.9 1.0 CD A:LYS145 4.6 40.5 1.0 N A:VAL146 4.6 24.9 1.0 CG A:LYS145 4.8 36.2 1.0 N A:LYS145 4.8 30.5 1.0 C A:ASN144 5.0 36.0 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl715 b:43.7 occ:1.00 O A:HOH927 2.6 33.6 1.0 O A:ILE137 3.0 15.7 1.0 OE1 A:GLU158 3.1 22.7 1.0 CD A:GLU158 3.4 24.6 1.0 OE2 A:GLU158 3.4 28.2 1.0 CZ A:PHE149 3.5 19.2 1.0 O A:HOH816 3.7 15.8 1.0 CA A:GLY138 3.7 16.6 1.0 CG A:PRO100 3.8 15.0 1.0 C A:ILE137 4.0 15.2 1.0 CE1 A:PHE149 4.0 19.2 1.0 C A:GLY138 4.1 17.3 1.0 CD A:PRO100 4.2 15.1 1.0 N A:HIS139 4.2 19.8 1.0 O A:HOH907 4.3 30.5 1.0 N A:GLY138 4.3 15.9 1.0 O A:HOH958 4.4 39.0 1.0 CG A:GLU158 4.5 21.6 1.0 CE2 A:PHE149 4.6 17.7 1.0 O A:HIS139 4.6 20.0 1.0 NH2 A:ARG20 4.7 18.7 1.0 O A:GLY138 4.8 14.6 1.0 NE A:ARG20 4.8 16.7 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl716 b:55.6 occ:1.00 O A:HOH889 2.8 13.6 1.0 OE1 A:GLU95 2.9 19.4 1.0 O A:HOH911 3.4 25.2 1.0 O A:GLY110 3.7 36.9 1.0 CE1 A:HIS93 3.9 15.2 1.0 CD A:GLU95 4.0 18.5 1.0 NE A:ARG134 4.0 19.1 1.0 CE A:LYS106 4.2 30.0 1.0 CD A:LYS106 4.3 25.8 1.0 NE2 A:HIS93 4.3 15.5 1.0 NH1 A:ARG132 4.4 17.4 1.0 CD1 A:LEU117 4.4 16.2 1.0 O A:HIS111 4.4 31.0 1.0 CD A:ARG134 4.4 17.6 1.0 C A:HIS111 4.4 35.5 1.0 OE2 A:GLU95 4.4 18.0 1.0 N A:GLY112 4.5 33.1 1.0 CA A:GLY112 4.6 30.5 1.0 CG A:ARG134 4.6 16.2 1.0 C A:GLY110 4.7 36.3 1.0 CZ A:ARG134 4.8 20.7 1.0 CA A:HIS111 4.9 35.5 1.0 NH2 A:ARG134 4.9 21.7 1.0 ND1 A:HIS93 5.0 14.0 1.0

S.Mundra, R.K.Pal, S.Tripathi, A.Jain, A.Arora. Structural and Functional Characterization of Peptidyl-Trna Hydrolase From Klebsiella Pneumoniae. Biochim Biophys Acta V.1869 40554 2021PROTEINS Proteom.
ISSN: ISSN 1878-1454
PubMed: 33068756
DOI: 10.1016/J.BBAPAP.2020.140554