Chlorine in PDB 7c0k: Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II)

The structure of Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II), PDB code: 7c0k was solved by S.P.Kanaujia, M.Chandravanshi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.57 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	66.17, 57.52, 121.14, 90, 94.99, 90
R / Rfree (%)	14.6 / 17.6

The structure of Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II) also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II) (pdb code 7c0k). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II), PDB code: 7c0k:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in the Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl501 b:37.1 occ:1.00 O A:GLY230 3.8 23.7 1.0 N A:GLY232 4.1 22.2 1.0 C A:GLY230 4.8 22.6 1.0 CA A:GLY232 4.9 20.3 1.0 CA A:SER231 5.0 25.8 1.0 C A:SER231 5.0 23.2 1.0

Chlorine binding site 2 out of 6 in the Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl501 b:26.8 occ:1.00 O B:HOH793 2.8 36.8 1.0 OG1 B:THR74 3.1 17.7 1.0 N B:GLU18 3.3 15.7 1.0 N B:THR74 3.4 14.2 1.0 C1 B:EDO514 3.5 39.7 1.0 O B:HOH702 3.6 23.9 1.0 CB B:GLU18 3.7 17.8 1.0 C2 B:EDO514 3.7 42.3 1.0 O B:HOH747 3.8 30.4 1.0 CG B:GLU18 3.9 19.9 1.0 CB B:THR74 3.9 14.9 1.0 CA B:PRO73 4.0 14.4 1.0 C B:PRO73 4.0 14.1 1.0 O B:VAL16 4.0 19.4 1.0 CA B:GLU18 4.1 16.4 1.0 CA B:THR74 4.2 14.7 1.0 C B:ALA17 4.2 16.2 1.0 CA B:ALA17 4.3 16.7 1.0 OE2 B:GLU288 4.3 27.5 1.0 CD B:GLU288 4.4 21.7 1.0 O B:GLU18 4.5 16.7 1.0 OE1 B:GLU288 4.6 20.6 1.0 CD B:GLU18 4.6 21.6 1.0 O B:VAL72 4.6 16.9 1.0 O1 B:EDO514 4.7 37.9 1.0 C B:GLU18 4.8 16.5 1.0 CB B:PRO73 4.8 14.3 1.0 C B:VAL16 4.8 19.4 1.0 OE1 B:GLU18 4.9 20.3 1.0 O2 B:EDO514 4.9 47.9 1.0

Chlorine binding site 3 out of 6 in the Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl502 b:49.0 occ:1.00 O B:HOH867 2.5 39.3 1.0 N B:GLY26 3.1 19.6 1.0 CA B:GLY26 3.9 18.7 1.0 CA B:GLY25 4.0 20.0 1.0 C B:GLY25 4.0 18.8 1.0 O B:HOH741 4.4 24.7 1.0 O B:HOH752 4.5 46.4 1.0

Chlorine binding site 4 out of 6 in the Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl503 b:31.2 occ:1.00 O B:HOH730 2.9 25.0 1.0 N B:PHE349 3.2 13.2 1.0 CA B:LYS348 3.7 12.3 1.0 O B:HOH746 3.8 30.5 1.0 O B:PHE349 3.9 14.1 1.0 C B:LYS348 4.0 12.0 1.0 CB B:LYS348 4.0 13.6 1.0 CA B:PHE349 4.1 13.1 1.0 CG B:LYS348 4.1 13.2 1.0 CB B:PHE349 4.1 13.7 1.0 CD1 B:PHE349 4.2 15.1 1.0 C B:PHE349 4.5 13.5 1.0 O B:ALA347 4.6 14.4 1.0 CG B:PHE349 4.7 14.5 1.0 O B:HOH831 4.9 39.6 1.0 N B:LYS348 4.9 13.3 1.0

Chlorine binding site 5 out of 6 in the Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl504 b:65.4 occ:1.00 NZ B:LYS140 3.2 23.8 1.0 CE B:LYS140 3.6 21.9 1.0

Chlorine binding site 6 out of 6 in the Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A Dinucleotide-Binding Protein of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form II) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl505 b:42.9 occ:1.00 O B:GLY230 3.7 28.1 1.0 N B:GLY232 4.2 23.5 1.0 C B:GLY230 4.6 25.0 1.0 CA B:SER231 4.8 28.1 1.0

M.Chandravanshi, R.Samanta, S.P.Kanaujia. Structural and Thermodynamic Insights Into the Novel Dinucleotide-Binding Protein of Abc Transporter Unveils Its Moonlighting Function. Febs J. 2021.
ISSN: ISSN 1742-464X
PubMed: 33599038
DOI: 10.1111/FEBS.15774