Chlorine in PDB 7c0r: Crystal Structure of A Dinucleotide-Binding Protein (F79A) of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form I)

Protein crystallography data

The structure of Crystal Structure of A Dinucleotide-Binding Protein (F79A) of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form I), PDB code: 7c0r was solved by S.P.Kanaujia, M.Chandravanshi, R.Samanta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.79 / 1.77
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 58.39, 121.58, 66.19, 90, 90, 90
R / Rfree (%) 14.3 / 18.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Dinucleotide-Binding Protein (F79A) of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form I) (pdb code 7c0r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Dinucleotide-Binding Protein (F79A) of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form I), PDB code: 7c0r:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7c0r

Go back to Chlorine Binding Sites List in 7c0r
Chlorine binding site 1 out of 2 in the Crystal Structure of A Dinucleotide-Binding Protein (F79A) of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form I)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Dinucleotide-Binding Protein (F79A) of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form I) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:33.9
occ:1.00
O A:HOH735 2.5 29.6 1.0
O2 A:CO2505 3.0 22.1 1.0
N A:ALA174 3.0 11.9 1.0
O A:ARG360 3.2 14.1 1.0
CA A:GLY365 3.5 16.8 1.0
CB A:ALA174 3.6 12.1 1.0
CB A:ASP173 3.6 14.5 1.0
C A:CO2505 3.6 28.6 1.0
CA A:ASP173 3.7 13.0 1.0
C A:ASP173 3.8 12.5 1.0
CD1 A:PHE361 3.9 15.6 1.0
CA A:ALA174 3.9 11.5 1.0
O A:HOH856 4.1 32.1 1.0
C A:ARG360 4.1 14.0 1.0
CA A:PHE361 4.1 15.2 1.0
O A:HOH640 4.2 32.3 1.0
N A:GLY365 4.2 16.7 1.0
O1 A:CO2505 4.3 37.4 1.0
CE1 A:PHE361 4.3 15.1 1.0
NH1 A:ARG360 4.4 13.6 1.0
N A:PHE361 4.5 13.7 1.0
NZ A:LYS369 4.5 23.1 1.0
CG A:ASP173 4.7 15.0 1.0
CG A:PHE361 4.7 15.6 1.0
O A:PHE361 4.7 16.1 1.0
C A:GLY365 4.7 17.2 1.0
C A:PHE361 4.9 16.9 1.0
CB A:PHE361 4.9 16.8 1.0
N A:SER175 5.0 13.2 1.0
C A:ALA174 5.0 12.2 1.0

Chlorine binding site 2 out of 2 in 7c0r

Go back to Chlorine Binding Sites List in 7c0r
Chlorine binding site 2 out of 2 in the Crystal Structure of A Dinucleotide-Binding Protein (F79A) of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form I)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Dinucleotide-Binding Protein (F79A) of Abc Transporter Endogenously Bound to Uridylyl-3'-5'-Phospho-Guanosine (Form I) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:33.3
occ:1.00
O A:HOH761 2.8 25.5 1.0
O A:HOH896 2.9 19.6 1.0
N A:LYS252 3.0 19.1 1.0
CB A:LYS252 3.6 24.1 1.0
CD1 A:PHE253 3.6 12.8 1.0
CE1 A:PHE253 3.6 12.6 1.0
N A:GLY230 3.8 20.1 1.0
CA A:LYS252 3.8 21.1 1.0
C A:ALA251 3.9 17.1 1.0
CG A:LYS252 3.9 25.9 1.0
CA A:ALA251 3.9 16.6 1.0
CB A:LEU229 4.0 16.8 1.0
O A:ALA250 4.0 17.6 1.0
CA A:GLY230 4.0 22.8 1.0
C A:LEU229 4.2 20.2 1.0
O A:HOH728 4.2 28.4 1.0
CD A:LYS252 4.3 29.5 1.0
C A:LYS252 4.5 22.1 1.0
N A:PHE253 4.5 18.3 1.0
CA A:LEU229 4.6 17.3 1.0
O A:LEU229 4.8 20.3 1.0
C A:ALA250 4.8 18.2 1.0
N A:ALA251 4.9 16.0 1.0
CG A:PHE253 4.9 13.3 1.0
CZ A:PHE253 4.9 11.8 1.0
CB A:ALA251 4.9 15.9 1.0
CG A:LEU229 4.9 16.7 1.0
CD1 A:LEU229 5.0 16.0 1.0

Reference:

M.Chandravanshi, R.Samanta, S.P.Kanaujia. Structural and Thermodynamic Insights Into the Novel Dinucleotide-Binding Protein of Abc Transporter Unveils Its Moonlighting Function. Febs J. 2021.
ISSN: ISSN 1742-464X
PubMed: 33599038
DOI: 10.1111/FEBS.15774
Page generated: Sat Apr 3 14:33:09 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy