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Chlorine in PDB 7c5g: Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution, PDB code: 7c5g was solved by L.Zhang, M.R.Liu, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.00 / 1.98
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 90.124, 90.124, 340.648, 90, 90, 90
R / Rfree (%) 14.7 / 19.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution (pdb code 7c5g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution, PDB code: 7c5g:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 7c5g

Go back to Chlorine Binding Sites List in 7c5g
Chlorine binding site 1 out of 6 in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl403

b:17.6
occ:1.00
 O O:HOH728 3.0 14.4 1.0
O O:HOH778 3.0 28.7 1.0
O P:HOH516 3.2 21.9 1.0
O O:HOH610 3.2 13.8 1.0
N O:GLY228 3.4 16.2 1.0
O O:GLY228 3.5 13.9 1.0
CB O:LYS227 3.6 15.4 1.0
CA O:LYS227 3.6 14.7 1.0
CG O:LYS227 3.8 16.5 1.0
CB O:LYS213 3.8 24.1 1.0
C O:LYS227 4.0 15.3 1.0
CG O:LYS213 4.1 27.8 1.0
O O:HOH564 4.4 16.3 1.0
C O:GLY228 4.4 15.1 1.0
CD O:LYS227 4.4 18.1 1.0
CA O:GLY228 4.4 16.1 1.0
N O:LYS213 4.4 19.0 1.0
CA O:LYS213 4.5 21.0 1.0
CD O:LYS213 4.5 28.6 1.0
OE2 P:GLU297 4.5 17.1 1.0
O O:THR209 4.6 18.4 1.0
O O:HOH784 4.8 31.5 1.0
O O:HOH755 4.9 25.5 1.0
N O:LYS227 4.9 14.4 1.0
O P:HOH760 5.0 22.6 1.0
O O:LEU226 5.0 16.6 1.0

Chlorine binding site 2 out of 6 in 7c5g

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Chlorine binding site 2 out of 6 in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl404

b:20.3
occ:1.00
 O O:HOH646 3.0 25.6 1.0
NH1 O:ARG232 3.1 13.6 1.0
NE O:ARG232 3.2 13.1 1.0
O O:HOH710 3.2 33.5 1.0
CD2 O:HIS177 3.5 14.0 1.0
CB O:ALA230 3.5 12.9 1.0
CD2 O:HIS207 3.6 23.5 1.0
CZ O:ARG232 3.6 14.2 1.0
NE2 O:HIS177 3.8 14.0 1.0
CB O:THR209 4.0 19.1 1.0
CG O:HIS177 4.0 13.9 1.0
CD O:ARG232 4.3 12.8 1.0
NE2 O:HIS207 4.4 23.2 1.0
CE1 O:HIS177 4.4 13.6 1.0
CG2 O:THR209 4.5 19.3 1.0
ND1 O:HIS177 4.5 13.7 1.0
OG1 O:THR151 4.5 15.6 1.0
OG1 O:THR209 4.5 21.2 1.0
O O:THR208 4.6 23.0 1.0
CB O:HIS177 4.6 12.6 1.0
CG O:HIS207 4.6 21.3 1.0
CG2 O:THR175 4.6 13.5 1.0
NH2 O:ARG232 4.9 14.6 1.0
CA O:ALA230 4.9 13.5 1.0

Chlorine binding site 3 out of 6 in 7c5g

Go back to Chlorine Binding Sites List in 7c5g
Chlorine binding site 3 out of 6 in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl403

b:21.8
occ:1.00
 O P:HOH717 3.0 15.6 1.0
O O:HOH506 3.1 20.4 1.0
O P:HOH763 3.1 25.6 1.0
O P:HOH531 3.3 16.5 1.0
N P:GLY228 3.4 15.7 1.0
O P:GLY228 3.5 16.0 1.0
CB P:LYS227 3.6 18.3 1.0
CA P:LYS227 3.6 17.1 1.0
CB P:LYS213 3.8 22.6 1.0
CG P:LYS227 3.9 17.9 1.0
C P:LYS227 4.0 16.6 1.0
O P:HOH592 4.4 12.6 1.0
CD P:LYS227 4.4 19.2 1.0
C P:GLY228 4.4 15.3 1.0
OE1 O:GLU297 4.4 16.8 1.0
CG P:LYS213 4.5 24.5 1.0
CA P:GLY228 4.5 15.3 1.0
N P:LYS213 4.5 21.4 1.0
CA P:LYS213 4.5 22.2 1.0
O P:HOH772 4.6 36.9 1.0
CD P:LYS213 4.6 27.7 1.0
O P:THR209 4.7 21.4 1.0
O P:HOH683 4.8 36.9 1.0
O P:HOH743 4.8 23.7 1.0
O P:HOH759 4.8 24.8 1.0
N P:LYS227 5.0 16.8 1.0
O P:HOH598 5.0 29.6 1.0

Chlorine binding site 4 out of 6 in 7c5g

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Chlorine binding site 4 out of 6 in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl404

b:20.5
occ:1.00
 O P:HOH615 3.1 26.1 1.0
NE P:ARG232 3.1 12.6 1.0
NH1 P:ARG232 3.1 12.3 1.0
CB P:ALA230 3.4 13.4 1.0
CD2 P:HIS207 3.5 24.3 1.0
CD2 P:HIS177 3.5 16.8 1.0
CZ P:ARG232 3.6 12.7 1.0
O P:HOH669 3.7 36.2 1.0
NE2 P:HIS177 3.8 15.8 1.0
CG P:HIS177 4.0 15.2 1.0
CB P:THR209 4.0 23.9 1.0
NE2 P:HIS207 4.3 27.5 1.0
CD P:ARG232 4.3 12.3 1.0
OG1 P:THR151 4.4 13.4 1.0
CE1 P:HIS177 4.4 17.1 1.0
ND1 P:HIS177 4.5 16.9 1.0
CB P:HIS177 4.5 13.4 1.0
CG P:HIS207 4.5 22.4 1.0
OG1 P:THR209 4.5 25.4 1.0
CG2 P:THR209 4.6 23.2 1.0
CG2 P:THR175 4.7 12.2 1.0
O P:THR208 4.8 23.0 1.0
NH2 P:ARG232 4.9 12.4 1.0
CA P:ALA230 4.9 12.8 1.0
CB P:HIS207 5.0 20.9 1.0

Chlorine binding site 5 out of 6 in 7c5g

Go back to Chlorine Binding Sites List in 7c5g
Chlorine binding site 5 out of 6 in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl404

b:25.2
occ:1.00
 O Q:HOH708 3.1 21.4 1.0
O R:HOH515 3.1 22.9 1.0
O Q:HOH604 3.3 22.7 1.0
N Q:GLY228 3.4 15.2 1.0
O Q:GLY228 3.5 14.2 1.0
CB Q:LYS227 3.5 17.3 1.0
CA Q:LYS227 3.6 16.3 1.0
CG Q:LYS227 3.8 18.3 1.0
CB Q:LYS213 3.9 36.2 1.0
C Q:LYS227 4.0 15.9 1.0
CG Q:LYS213 4.3 39.8 1.0
C Q:GLY228 4.4 14.1 1.0
CD Q:LYS213 4.4 40.3 1.0
CD Q:LYS227 4.4 21.4 1.0
O Q:HOH574 4.4 16.9 1.0
CA Q:GLY228 4.4 14.9 1.0
OE2 R:GLU297 4.5 18.4 1.0
CA Q:LYS213 4.6 31.0 1.0
N Q:LYS213 4.6 26.8 1.0
O Q:HOH729 4.6 24.5 1.0
O Q:HOH754 4.8 24.9 1.0
O Q:THR209 4.8 27.9 1.0
N Q:LYS227 5.0 16.5 1.0
O Q:LEU226 5.0 14.1 1.0

Chlorine binding site 6 out of 6 in 7c5g

Go back to Chlorine Binding Sites List in 7c5g
Chlorine binding site 6 out of 6 in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 1.98 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cl404

b:29.8
occ:1.00
 O Q:HOH579 3.0 20.3 1.0
O R:HOH661 3.2 20.3 1.0
O R:HOH547 3.3 25.1 1.0
N R:GLY228 3.4 17.9 1.0
O R:GLY228 3.4 16.0 1.0
CB R:LYS227 3.6 19.5 1.0
CA R:LYS227 3.6 17.4 1.0
CG R:LYS227 3.8 20.1 1.0
C R:LYS227 4.0 17.9 1.0
CB R:LYS213 4.1 48.6 1.0
O R:HOH536 4.3 19.4 1.0
CD R:LYS227 4.3 22.1 1.0
C R:GLY228 4.3 17.0 1.0
OE2 Q:GLU297 4.3 19.2 1.0
CD R:LYS213 4.4 45.5 1.0
CG R:LYS213 4.4 47.2 1.0
CA R:GLY228 4.5 17.4 1.0
N R:LYS213 4.6 39.9 1.0
CA R:LYS213 4.6 42.7 1.0
O R:HOH666 4.7 29.8 1.0
O R:THR209 4.7 30.4 1.0
O R:HOH688 4.8 30.3 1.0
N R:LYS227 5.0 17.3 1.0
O R:LEU226 5.0 17.2 1.0

Reference:

L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji. Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Escherichia Coli Provides New Sight For Product Binding and Catalytic Mechanism To Be Published.
Page generated: Mon Jul 29 19:27:09 2024

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