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Chlorine in PDB 7c5h: Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution, PDB code: 7c5h was solved by L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.09
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.778, 89.778, 340.953, 90, 90, 90
R / Rfree (%) 15.1 / 20.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution (pdb code 7c5h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution, PDB code: 7c5h:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 7c5h

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Chlorine binding site 1 out of 7 in the Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl404

b:22.2
occ:1.00
 O O:HOH535 2.8 27.8 1.0
NE O:ARG232 3.2 14.4 1.0
NH1 O:ARG232 3.2 14.5 1.0
CB O:ALA230 3.5 15.7 1.0
CD2 O:HIS177 3.6 16.0 1.0
CD2 O:HIS207 3.6 26.7 1.0
O O:HOH681 3.6 31.1 1.0
CZ O:ARG232 3.6 14.8 1.0
CG O:HIS177 3.8 14.2 1.0
NE2 O:HIS177 4.0 16.8 1.0
CB O:HIS177 4.2 13.0 1.0
ND1 O:HIS177 4.2 14.9 1.0
CB O:THR209 4.2 18.1 1.0
NE2 O:HIS207 4.3 27.4 1.0
CD O:ARG232 4.3 14.1 1.0
OG1 O:THR151 4.4 14.4 1.0
CE1 O:HIS177 4.4 14.4 1.0
CG2 O:THR175 4.5 13.9 1.0
OG1 O:THR209 4.6 19.6 1.0
CG O:HIS207 4.7 23.3 1.0
CG2 O:THR209 4.8 19.6 1.0
CA O:ALA230 4.9 14.7 1.0
NH2 O:ARG232 5.0 14.4 1.0

Chlorine binding site 2 out of 7 in 7c5h

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Chlorine binding site 2 out of 7 in the Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl407

b:19.2
occ:1.00
 O O:HOH619 3.0 13.6 1.0
O O:HOH703 3.1 17.7 1.0
O P:HOH563 3.1 22.5 1.0
N O:GLY228 3.3 16.4 1.0
O O:GLY228 3.5 16.0 1.0
CA O:LYS227 3.6 17.4 1.0
CB O:LYS227 3.6 18.1 1.0
CB O:LYS213 3.8 26.3 1.0
CG O:LYS227 3.8 20.8 1.0
C O:LYS227 4.0 16.6 1.0
CG O:LYS213 4.1 29.5 1.0
O O:HOH566 4.4 12.6 1.0
CD O:LYS227 4.4 22.4 1.0
C O:GLY228 4.4 15.2 1.0
N O:LYS213 4.4 18.5 1.0
CA O:GLY228 4.4 17.1 1.0
CA O:LYS213 4.4 22.2 1.0
CD O:LYS213 4.5 30.4 1.0
O O:THR209 4.5 19.3 1.0
OE2 P:GLU297 4.7 22.8 1.0
O O:HOH722 4.7 24.2 1.0
O O:LEU226 4.9 16.8 1.0
N O:LYS227 4.9 16.9 1.0

Chlorine binding site 3 out of 7 in 7c5h

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Chlorine binding site 3 out of 7 in the Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl408

b:18.1
occ:1.00
 O O:HOH581 3.1 14.1 1.0
N O:LYS81 3.3 15.9 1.0
N O:ALA80 3.4 15.2 1.0
CB O:ALA108 3.6 12.5 1.0
CG O:LYS81 3.8 21.9 1.0
CB O:LYS81 3.8 20.4 1.0
C O:GLU79 3.9 16.8 1.0
CB O:GLU79 3.9 18.6 1.0
CB O:ALA80 4.0 16.0 1.0
CE1 O:TYR100 4.0 14.1 1.0
CA O:ALA80 4.1 15.7 1.0
CA O:GLU79 4.1 18.6 1.0
CD O:LYS81 4.1 24.0 1.0
C O:ALA80 4.2 15.6 1.0
CA O:LYS81 4.2 17.5 1.0
OH O:TYR100 4.5 14.5 1.0
CZ O:TYR100 4.8 14.5 1.0
O O:GLU79 4.8 15.3 1.0
CG O:GLU79 4.8 20.7 1.0
CD1 O:TYR100 4.9 14.8 1.0
OE2 O:GLU79 5.0 26.3 1.0

Chlorine binding site 4 out of 7 in 7c5h

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Chlorine binding site 4 out of 7 in the Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl407

b:24.8
occ:1.00
 O O:HOH540 3.1 27.2 1.0
O P:HOH726 3.1 37.8 1.0
O P:HOH550 3.2 16.2 1.0
O P:HOH698 3.2 21.8 1.0
N P:GLY228 3.3 16.4 1.0
O P:GLY228 3.5 15.2 1.0
CB P:LYS227 3.6 19.0 1.0
CA P:LYS227 3.6 18.0 1.0
CG P:LYS227 3.8 21.0 1.0
CB P:LYS213 3.8 30.8 1.0
C P:LYS227 4.0 16.9 1.0
C P:GLY228 4.3 15.3 1.0
O P:HOH593 4.3 15.9 1.0
CA P:GLY228 4.4 15.4 1.0
CD P:LYS227 4.4 22.7 1.0
CG P:LYS213 4.4 35.7 1.0
CD P:LYS213 4.4 39.1 1.0
N P:LYS213 4.5 23.6 1.0
OE1 O:GLU297 4.5 23.6 1.0
CA P:LYS213 4.6 27.2 1.0
O P:THR209 4.6 27.6 1.0
N P:LYS227 5.0 17.4 1.0

Chlorine binding site 5 out of 7 in 7c5h

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Chlorine binding site 5 out of 7 in the Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl406

b:23.4
occ:1.00
 O R:HOH519 2.9 24.6 1.0
O Q:HOH674 3.0 28.1 1.0
O Q:HOH563 3.2 20.0 1.0
N Q:GLY228 3.4 17.9 1.0
O Q:GLY228 3.4 16.9 1.0
CB Q:LYS227 3.6 19.6 1.0
CA Q:LYS227 3.7 18.3 1.0
CB Q:LYS213 3.9 30.8 1.0
CG Q:LYS227 3.9 22.7 1.0
C Q:LYS227 4.1 17.3 1.0
CG Q:LYS213 4.3 33.8 1.0
C Q:GLY228 4.3 18.2 1.0
O Q:HOH532 4.4 17.5 1.0
CA Q:GLY228 4.4 20.2 1.0
CD Q:LYS227 4.4 25.3 1.0
OE2 R:GLU297 4.4 29.2 1.0
CD Q:LYS213 4.5 34.6 1.0
N Q:LYS213 4.6 23.7 1.0
CA Q:LYS213 4.6 25.6 1.0
O Q:THR209 4.6 26.6 1.0
O Q:HOH696 4.7 28.0 1.0
O Q:HOH720 4.9 28.9 1.0

Chlorine binding site 6 out of 7 in 7c5h

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Chlorine binding site 6 out of 7 in the Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cl406

b:31.4
occ:1.00
 O Q:HOH517 2.9 22.8 1.0
O R:HOH635 3.2 27.4 1.0
O R:HOH582 3.2 28.5 1.0
N R:GLY228 3.3 21.5 1.0
O R:GLY228 3.4 19.1 1.0
CB R:LYS227 3.6 20.0 1.0
CA R:LYS227 3.6 20.2 1.0
CG R:LYS227 3.7 21.3 1.0
C R:LYS227 3.9 20.6 1.0
CB R:LYS213 4.2 46.8 1.0
O R:HOH542 4.2 21.5 1.0
C R:GLY228 4.3 21.6 1.0
OE2 Q:GLU297 4.3 24.9 1.0
CA R:GLY228 4.3 20.6 1.0
CD R:LYS227 4.3 22.1 1.0
CG R:LYS213 4.4 47.9 1.0
N R:LYS213 4.5 38.6 1.0
CD R:LYS213 4.5 49.6 1.0
O R:THR209 4.6 37.9 1.0
O R:HOH645 4.7 32.1 1.0
O Q:HOH714 4.7 35.6 1.0
CA R:LYS213 4.7 41.2 1.0
N R:LYS227 4.9 20.5 1.0

Chlorine binding site 7 out of 7 in 7c5h

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Chlorine binding site 7 out of 7 in the Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli at 2.09 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cl407

b:43.2
occ:1.00
 O R:HOH620 3.3 30.9 1.0
N R:LYS81 3.5 40.2 1.0
N R:ALA80 3.5 37.3 1.0
CB R:ALA108 3.7 44.2 1.0
CB R:GLU79 3.8 41.8 1.0
CB R:LYS81 3.9 43.6 1.0
CD R:LYS81 4.0 49.9 1.0
C R:GLU79 4.0 37.6 1.0
CA R:GLU79 4.0 39.2 1.0
CG R:LYS81 4.1 44.1 1.0
CE1 R:TYR100 4.1 38.2 1.0
CA R:ALA80 4.3 36.2 1.0
CA R:LYS81 4.3 43.8 1.0
C R:ALA80 4.4 34.0 1.0
CB R:ALA80 4.4 39.1 1.0
OH R:TYR100 4.4 38.7 1.0
CG R:GLU79 4.4 43.9 1.0
OE2 R:GLU79 4.6 55.2 1.0
CZ R:TYR100 4.7 38.8 1.0
CD R:GLU79 4.8 49.4 1.0
O R:GLU79 4.9 32.8 1.0
CE R:LYS81 5.0 52.3 1.0

Reference:

L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji. Crystal Structure of TYPE1 Glyceraldehyde-3-Phosphate Dehydrogenase From Escherichia Coli Provides New Insight Into Bpg Generation and Catalytic Mechanism To Be Published.
Page generated: Mon Jul 29 19:27:06 2024

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