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Chlorine in PDB 7c5i: Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution, PDB code: 7c5i was solved by L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.03 / 2.48
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.679, 89.679, 341.261, 90, 90, 90
R / Rfree (%) 15.5 / 22.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution (pdb code 7c5i). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution, PDB code: 7c5i:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7c5i

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Chlorine binding site 1 out of 5 in the Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl406

b:30.3
occ:1.00
 O O:HOH640 3.0 18.7 1.0
O O:HOH524 3.3 30.8 1.0
O P:HOH553 3.3 24.3 1.0
N O:GLY228 3.5 27.1 1.0
O O:GLY228 3.6 26.8 1.0
CB O:LYS227 3.8 26.3 1.0
CA O:LYS227 3.8 27.1 1.0
CB O:LYS213 3.8 36.1 1.0
CG O:LYS227 3.9 27.2 1.0
C O:LYS227 4.2 26.9 1.0
CD O:LYS227 4.2 26.9 1.0
CG O:LYS213 4.2 39.8 1.0
O O:HOH579 4.3 26.2 1.0
CD O:LYS213 4.5 41.4 1.0
CA O:LYS213 4.5 34.2 1.0
O O:THR209 4.5 29.5 1.0
C O:GLY228 4.5 25.7 1.0
N O:LYS213 4.5 30.1 1.0
CA O:GLY228 4.6 26.4 1.0
OE2 P:GLU297 4.6 24.1 1.0
O O:HOH657 4.7 23.0 1.0
O O:LEU226 5.0 30.4 1.0

Chlorine binding site 2 out of 5 in 7c5i

Go back to Chlorine Binding Sites List in 7c5i
Chlorine binding site 2 out of 5 in the Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl407

b:37.5
occ:1.00
 O O:HOH547 3.2 23.0 1.0
N O:LYS81 3.4 25.1 1.0
N O:ALA80 3.4 25.6 1.0
CB O:ALA108 3.5 23.4 1.0
CG O:LYS81 3.8 28.5 1.0
CB O:LYS81 3.9 26.4 1.0
CB O:ALA80 4.0 25.2 1.0
C O:GLU79 4.0 27.1 1.0
CA O:ALA80 4.0 25.7 1.0
CD O:LYS81 4.0 30.2 1.0
CE1 O:TYR100 4.0 22.9 1.0
CB O:GLU79 4.2 29.8 1.0
C O:ALA80 4.2 25.8 1.0
CA O:GLU79 4.2 28.7 1.0
CA O:LYS81 4.3 27.0 1.0
OH O:TYR100 4.4 20.4 1.0
CE O:LYS81 4.6 34.8 1.0
CZ O:TYR100 4.7 21.6 1.0
O O:GLU79 4.8 26.2 1.0
CG O:GLU79 4.8 29.6 1.0
CA O:ALA108 4.9 23.4 1.0
CD1 O:TYR100 5.0 23.3 1.0

Chlorine binding site 3 out of 5 in 7c5i

Go back to Chlorine Binding Sites List in 7c5i
Chlorine binding site 3 out of 5 in the Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl405

b:34.0
occ:1.00
 O P:HOH547 3.1 30.9 1.0
O O:HOH532 3.1 30.8 1.0
O P:HOH630 3.2 30.4 1.0
N P:GLY228 3.3 24.3 1.0
O P:GLY228 3.5 20.7 1.0
CB P:LYS227 3.6 29.7 1.0
CA P:LYS227 3.6 27.8 1.0
CG P:LYS227 3.8 29.0 1.0
CB P:LYS213 3.9 35.4 1.0
C P:LYS227 3.9 25.3 1.0
O P:HOH519 4.3 24.7 1.0
C P:GLY228 4.3 22.3 1.0
OE1 O:GLU297 4.4 36.8 1.0
CA P:GLY228 4.4 22.7 1.0
CG P:LYS213 4.4 37.9 1.0
CD P:LYS227 4.5 29.9 1.0
N P:LYS213 4.6 30.9 1.0
O P:THR209 4.6 31.0 1.0
CA P:LYS213 4.7 32.6 1.0
CD P:LYS213 4.7 39.4 1.0
N P:LYS227 4.9 27.3 1.0

Chlorine binding site 4 out of 5 in 7c5i

Go back to Chlorine Binding Sites List in 7c5i
Chlorine binding site 4 out of 5 in the Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl406

b:36.7
occ:1.00
 O Q:HOH612 3.0 33.7 1.0
O R:HOH512 3.0 26.1 1.0
N Q:GLY228 3.4 23.8 1.0
O Q:HOH503 3.4 30.1 1.0
O Q:GLY228 3.5 25.0 1.0
CB Q:LYS227 3.5 27.1 1.0
CA Q:LYS227 3.7 25.9 1.0
CG Q:LYS227 3.8 29.4 1.0
CB Q:LYS213 3.9 34.1 1.0
CD Q:LYS227 4.0 32.0 1.0
C Q:LYS227 4.0 24.7 1.0
CG Q:LYS213 4.2 36.4 1.0
C Q:GLY228 4.3 24.4 1.0
OE2 R:GLU297 4.3 29.6 1.0
CA Q:GLY228 4.4 24.1 1.0
O Q:HOH509 4.4 21.5 1.0
N Q:LYS213 4.5 31.3 1.0
CA Q:LYS213 4.6 31.5 1.0
O Q:HOH628 4.6 27.5 1.0
O Q:THR209 4.7 26.6 1.0
CD Q:LYS213 4.7 39.9 1.0
N Q:LYS227 5.0 25.8 1.0

Chlorine binding site 5 out of 5 in 7c5i

Go back to Chlorine Binding Sites List in 7c5i
Chlorine binding site 5 out of 5 in the Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of C150A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with PO4 at 2.49 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cl406

b:37.7
occ:1.00
 O R:HOH572 3.1 24.6 1.0
O Q:HOH592 3.1 28.7 1.0
O R:HOH513 3.3 43.2 1.0
N R:GLY228 3.5 29.9 1.0
O R:GLY228 3.6 29.9 1.0
CA R:LYS227 3.8 30.1 1.0
CB R:LYS227 3.8 30.8 1.0
CB R:LYS213 3.9 41.2 1.0
CG R:LYS227 4.0 31.6 1.0
CD R:LYS213 4.1 44.6 1.0
C R:LYS227 4.1 30.0 1.0
CD R:LYS227 4.2 31.3 1.0
CG R:LYS213 4.4 43.8 1.0
O R:HOH562 4.4 29.7 1.0
O R:THR209 4.5 33.6 1.0
C R:GLY228 4.5 30.6 1.0
OE2 Q:GLU297 4.5 30.4 1.0
CA R:GLY228 4.5 29.2 1.0
N R:LYS213 4.6 39.3 1.0
CA R:LYS213 4.6 38.8 1.0
O R:HOH594 4.7 27.9 1.0

Reference:

L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji. Crystal Structure of TYPE1 Glyceraldehyde-3-Phosphate Dehydrogenase From Escherichia Coli Provides New Insight Into Bpg Generation and Catalytic Mechanism To Be Published.
Page generated: Mon Jul 29 19:27:51 2024

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