Chlorine in PDB 7c5l: Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution, PDB code: 7c5l was solved by L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.89 / 2.09
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.4, 89.4, 340.266, 90, 90, 90
R / Rfree (%) 14.8 / 20.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution (pdb code 7c5l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution, PDB code: 7c5l:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7c5l

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Chlorine binding site 1 out of 5 in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl402

b:22.6
occ:1.00
O O:HOH780 3.2 33.3 1.0
O O:HOH533 3.2 16.1 1.0
N O:LYS81 3.3 17.1 1.0
N O:ALA80 3.5 15.7 1.0
CB O:ALA108 3.6 15.5 1.0
CB O:LYS81 3.7 20.7 1.0
CG O:LYS81 3.8 23.4 1.0
C O:GLU79 4.0 17.2 1.0
CB O:GLU79 4.0 19.4 1.0
CE1 O:TYR100 4.0 15.6 1.0
CB O:ALA80 4.1 17.7 1.0
CA O:ALA80 4.1 16.9 1.0
CA O:LYS81 4.1 19.2 1.0
CD O:LYS81 4.2 27.1 1.0
CA O:GLU79 4.2 18.8 1.0
C O:ALA80 4.2 17.1 1.0
OH O:TYR100 4.6 14.4 1.0
CZ O:TYR100 4.8 15.8 1.0
O O:GLU79 4.8 16.4 1.0
CD1 O:TYR100 4.9 15.0 1.0
CG O:GLU79 4.9 22.5 1.0
CE O:LYS81 5.0 32.0 1.0

Chlorine binding site 2 out of 5 in 7c5l

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Chlorine binding site 2 out of 5 in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl403

b:25.7
occ:1.00
O O:HOH614 2.8 31.5 1.0
NH1 O:ARG232 3.2 16.4 1.0
NE O:ARG232 3.2 17.3 1.0
CB O:ALA230 3.4 16.1 1.0
CD2 O:HIS177 3.5 16.7 1.0
O O:HOH723 3.5 33.9 1.0
CD2 O:HIS207 3.6 28.2 1.0
CZ O:ARG232 3.7 16.4 1.0
NE2 O:HIS177 3.9 15.8 1.0
CG O:HIS177 3.9 14.8 1.0
CB O:THR209 4.1 21.8 1.0
CD O:ARG232 4.4 17.1 1.0
CB O:HIS177 4.4 14.4 1.0
NE2 O:HIS207 4.4 31.2 1.0
OG1 O:THR151 4.4 17.1 1.0
OG1 O:THR209 4.5 24.4 1.0
ND1 O:HIS177 4.5 16.2 1.0
CE1 O:HIS177 4.5 14.9 1.0
CG2 O:THR175 4.5 15.3 1.0
CG O:HIS207 4.6 25.2 1.0
CG2 O:THR209 4.7 23.0 1.0
O O:THR208 4.8 21.7 1.0
CA O:ALA230 4.9 15.9 1.0
CB O:HIS207 5.0 20.7 1.0

Chlorine binding site 3 out of 5 in 7c5l

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Chlorine binding site 3 out of 5 in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl402

b:27.9
occ:1.00
NH1 P:ARG232 3.1 15.4 1.0
O P:HOH643 3.1 28.6 1.0
NE P:ARG232 3.3 14.6 1.0
CD2 P:HIS177 3.3 18.7 1.0
CB P:ALA230 3.5 14.0 1.0
CD2 P:HIS207 3.5 29.9 1.0
CZ P:ARG232 3.7 15.2 1.0
NE2 P:HIS177 3.8 19.4 1.0
CG P:HIS177 3.9 16.6 1.0
CB P:THR209 4.1 21.5 1.0
NE2 P:HIS207 4.2 30.5 1.0
CB P:HIS177 4.4 15.7 1.0
OG1 P:THR151 4.4 16.5 1.0
CG2 P:THR209 4.4 21.3 1.0
CD P:ARG232 4.4 15.4 1.0
CE1 P:HIS177 4.5 17.9 1.0
ND1 P:HIS177 4.5 17.9 1.0
CG2 P:THR175 4.6 17.7 1.0
CG P:HIS207 4.6 28.5 1.0
OG1 P:THR209 4.7 22.3 1.0
O P:THR208 4.8 23.3 1.0
CA P:ALA230 5.0 14.8 1.0
NH2 P:ARG232 5.0 17.1 1.0

Chlorine binding site 4 out of 5 in 7c5l

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Chlorine binding site 4 out of 5 in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl402

b:22.8
occ:1.00
O Q:HOH534 2.8 33.4 1.0
NH1 Q:ARG232 3.2 17.5 1.0
NE Q:ARG232 3.3 15.9 1.0
O Q:HOH601 3.4 32.3 1.0
CB Q:ALA230 3.5 15.9 1.0
CD2 Q:HIS207 3.5 25.0 1.0
CD2 Q:HIS177 3.5 17.4 1.0
CZ Q:ARG232 3.7 16.9 1.0
NE2 Q:HIS177 3.9 16.0 1.0
CG Q:HIS177 4.0 16.1 1.0
CB Q:THR209 4.1 23.4 1.0
NE2 Q:HIS207 4.2 29.2 1.0
OG1 Q:THR151 4.4 13.7 1.0
CB Q:HIS177 4.5 15.7 1.0
CG2 Q:THR209 4.5 23.6 1.0
CD Q:ARG232 4.5 14.5 1.0
ND1 Q:HIS177 4.5 15.7 1.0
CE1 Q:HIS177 4.5 15.2 1.0
O Q:HOH723 4.5 40.2 1.0
CG2 Q:THR175 4.5 15.6 1.0
OG1 Q:THR209 4.6 24.7 1.0
CG Q:HIS207 4.6 24.8 1.0
CA Q:ALA230 4.9 15.1 1.0
O Q:THR208 4.9 22.7 1.0

Chlorine binding site 5 out of 5 in 7c5l

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Chlorine binding site 5 out of 5 in the Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of C150S Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cl402

b:30.3
occ:1.00
O R:HOH557 3.0 36.3 1.0
NE R:ARG232 3.2 16.8 1.0
NH1 R:ARG232 3.2 20.5 1.0
CD2 R:HIS177 3.5 19.7 1.0
CB R:ALA230 3.5 18.4 1.0
CD2 R:HIS207 3.6 33.3 1.0
CZ R:ARG232 3.7 17.5 1.0
NE2 R:HIS177 3.9 18.4 1.0
CG R:HIS177 3.9 18.7 1.0
CB R:THR209 4.0 31.0 1.0
NE2 R:HIS207 4.2 34.9 1.0
OG1 R:THR151 4.4 24.1 1.0
CD R:ARG232 4.4 16.9 1.0
OG1 R:THR209 4.4 32.4 1.0
CB R:HIS177 4.4 16.5 1.0
CE1 R:HIS177 4.5 17.1 1.0
CG2 R:THR209 4.5 28.7 1.0
CG2 R:THR175 4.5 17.3 1.0
ND1 R:HIS177 4.5 18.1 1.0
CG R:HIS207 4.7 34.2 1.0
O R:THR208 4.7 30.1 1.0
CA R:ALA230 5.0 17.2 1.0

Reference:

L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji. Crystal Structure of TYPE1 Glyceraldehyde-3-Phosphate Dehydrogenase From Escherichia Coli Provides New Insight Into Bpg Generation and Catalytic Mechanism To Be Published.
Page generated: Sat Jul 10 12:36:01 2021

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