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Chlorine in PDB 7c5n: Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution, PDB code: 7c5n was solved by L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.99
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.376, 89.376, 341.506, 90, 90, 90
R / Rfree (%) 16.1 / 21.9

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution (pdb code 7c5n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution, PDB code: 7c5n:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in 7c5n

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Chlorine binding site 1 out of 11 in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl403

b:29.5
occ:1.00
 O O:HOH797 3.0 33.6 1.0
O O:HOH733 3.1 26.7 1.0
O P:HOH556 3.1 32.1 1.0
O O:HOH563 3.2 23.0 1.0
N O:GLY228 3.4 22.6 1.0
O O:GLY228 3.5 23.8 1.0
CB O:LYS227 3.6 24.9 1.0
CA O:LYS227 3.7 22.9 1.0
CB O:LYS213 3.7 27.6 1.0
CG O:LYS227 3.9 26.9 1.0
C O:LYS227 4.1 21.2 1.0
CG O:LYS213 4.3 33.2 1.0
CD O:LYS227 4.3 27.6 1.0
O O:HOH639 4.4 21.9 1.0
CD O:LYS213 4.4 34.4 1.0
C O:GLY228 4.4 20.4 1.0
CA O:LYS213 4.5 24.8 1.0
CA O:GLY228 4.5 20.9 1.0
O O:THR209 4.6 26.8 1.0
N O:LYS213 4.6 23.0 1.0
OE2 P:GLU297 4.7 28.1 1.0
O O:HOH768 4.8 29.8 1.0
O O:HOH795 4.9 41.0 1.0
O O:LEU226 4.9 21.4 1.0
N O:LYS227 5.0 21.6 1.0

Chlorine binding site 2 out of 11 in 7c5n

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Chlorine binding site 2 out of 11 in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl404

b:29.4
occ:1.00
 O O:HOH771 2.9 37.8 1.0
O O:HOH817 3.2 33.3 1.0
O O:HOH525 3.2 19.5 1.0
N O:LYS81 3.4 20.4 1.0
N O:ALA80 3.5 21.4 1.0
CB O:ALA108 3.7 19.9 1.0
CG O:LYS81 3.8 23.4 1.0
CB O:LYS81 3.8 22.9 1.0
C O:GLU79 4.1 21.3 1.0
CE1 O:TYR100 4.1 21.0 1.0
CB O:ALA80 4.1 20.9 1.0
CB O:GLU79 4.1 24.9 1.0
CA O:ALA80 4.2 20.1 1.0
CD O:LYS81 4.2 28.8 1.0
CA O:GLU79 4.2 23.7 1.0
CA O:LYS81 4.2 18.7 1.0
C O:ALA80 4.3 20.5 1.0
O O:HOH809 4.4 44.4 1.0
OH O:TYR100 4.5 23.2 1.0
CE O:LYS81 4.6 33.0 1.0
CZ O:TYR100 4.8 21.9 1.0
O O:GLU79 4.9 19.3 1.0
CG O:GLU79 4.9 30.0 1.0
CD1 O:TYR100 4.9 23.6 1.0

Chlorine binding site 3 out of 11 in 7c5n

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Chlorine binding site 3 out of 11 in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl405

b:33.4
occ:1.00
 O O:HOH646 3.0 24.7 1.0
O O:HOH673 3.2 25.2 1.0
O O:HOH763 3.3 39.0 1.0
OG1 O:THR180 3.3 18.3 1.0
O2D O:NAD401 3.6 26.9 1.0
C2D O:NAD401 3.9 27.6 1.0
CG2 O:THR182 3.9 24.1 1.0
C2N O:NAD401 3.9 25.2 1.0
CB O:THR180 3.9 18.2 1.0
CG2 O:THR180 4.2 18.3 1.0
OG1 O:THR182 4.2 22.7 1.0
NH1 O:ARG232 4.3 19.8 1.0
O O:HOH773 4.4 46.5 1.0
C3N O:NAD401 4.5 28.0 1.0
N1N O:NAD401 4.6 29.8 1.0
C7N O:NAD401 4.6 25.4 1.0
N7N O:NAD401 4.6 22.5 1.0
O O:HOH607 4.6 36.5 1.0
CB O:THR182 4.7 21.5 1.0
O O:HOH789 4.8 42.5 1.0
C1D O:NAD401 4.8 26.9 1.0
O1N O:NAD401 5.0 21.1 1.0
O O:HOH644 5.0 32.4 1.0
O O:HOH669 5.0 29.0 1.0

Chlorine binding site 4 out of 11 in 7c5n

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Chlorine binding site 4 out of 11 in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl403

b:30.6
occ:1.00
 O P:HOH775 2.8 37.0 1.0
O O:HOH615 3.1 24.8 1.0
O P:HOH706 3.1 28.1 1.0
O P:HOH521 3.3 24.3 1.0
N P:GLY228 3.3 21.7 1.0
CB P:LYS227 3.5 24.6 1.0
CA P:LYS227 3.6 23.4 1.0
O P:GLY228 3.6 21.9 1.0
CB P:LYS213 3.7 25.6 1.0
CG P:LYS227 3.7 23.1 1.0
C P:LYS227 3.9 23.0 1.0
CD P:LYS227 4.2 24.3 1.0
O P:HOH574 4.3 22.9 1.0
CG P:LYS213 4.4 29.0 1.0
N P:LYS213 4.4 20.6 1.0
CA P:LYS213 4.4 24.0 1.0
CA P:GLY228 4.4 21.8 1.0
CD P:LYS213 4.4 31.0 1.0
C P:GLY228 4.5 20.9 1.0
O P:HOH778 4.5 45.8 1.0
O P:THR209 4.6 31.1 1.0
OE1 O:GLU297 4.6 34.8 1.0
O P:HOH742 4.8 34.0 1.0
O P:HOH588 4.9 41.2 1.0
O P:HOH769 4.9 42.6 1.0
O P:LEU226 4.9 20.3 1.0
N P:LYS227 5.0 24.2 1.0

Chlorine binding site 5 out of 11 in 7c5n

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Chlorine binding site 5 out of 11 in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl404

b:30.3
occ:1.00
 O P:HOH603 3.0 32.8 1.0
O P:HOH629 3.2 26.7 1.0
O2D P:NAD401 3.3 29.6 0.9
OG1 P:THR180 3.4 17.3 1.0
O P:HOH741 3.5 36.1 1.0
C2D P:NAD401 3.7 33.9 0.9
CG2 P:THR182 3.7 31.5 1.0
C2N P:NAD401 3.8 35.8 0.9
CB P:THR180 3.9 18.8 1.0
CG2 P:THR180 4.2 19.3 1.0
OG1 P:THR182 4.2 30.2 1.0
N1N P:NAD401 4.3 41.1 0.9
C3N P:NAD401 4.3 36.9 0.9
NH1 P:ARG232 4.4 28.6 1.0
C1D P:NAD401 4.6 37.3 0.9
C7N P:NAD401 4.6 37.2 0.9
CB P:THR182 4.7 27.5 1.0
O2N P:NAD401 4.8 27.6 0.9
N7N P:NAD401 4.8 31.7 0.9
O P:HOH720 4.9 45.6 1.0
C3D P:NAD401 5.0 35.9 0.9

Chlorine binding site 6 out of 11 in 7c5n

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Chlorine binding site 6 out of 11 in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl405

b:37.4
occ:1.00
 O P:HOH714 3.0 40.1 1.0
O P:HOH780 3.1 42.3 1.0
O P:HOH537 3.2 27.8 1.0
N P:LYS81 3.2 21.8 1.0
N P:ALA80 3.5 21.4 1.0
CB P:ALA108 3.6 21.9 1.0
CB P:LYS81 3.6 28.9 1.0
CG P:LYS81 3.8 29.2 1.0
CA P:LYS81 4.0 24.0 1.0
CE1 P:TYR100 4.1 22.8 1.0
C P:GLU79 4.1 25.6 1.0
CB P:GLU79 4.1 30.2 1.0
CB P:ALA80 4.1 21.2 1.0
CA P:ALA80 4.1 21.5 1.0
C P:ALA80 4.1 19.3 1.0
CD P:LYS81 4.2 37.4 1.0
CA P:GLU79 4.3 26.0 1.0
OH P:TYR100 4.5 23.1 1.0
OE2 P:GLU79 4.7 41.5 1.0
CZ P:TYR100 4.8 21.9 1.0
O P:GLU79 4.8 21.9 1.0
CG P:GLU79 4.9 33.7 1.0
CD1 P:TYR100 5.0 22.6 1.0
CA P:ALA108 5.0 22.4 1.0

Chlorine binding site 7 out of 11 in 7c5n

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Chlorine binding site 7 out of 11 in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl402

b:24.9
occ:1.00
 O R:HOH579 3.1 27.9 1.0
O Q:HOH693 3.3 25.5 1.0
O Q:HOH553 3.3 23.6 1.0
N Q:GLY228 3.4 21.8 1.0
O Q:GLY228 3.6 22.1 1.0
CB Q:LYS227 3.7 25.0 1.0
CA Q:LYS227 3.7 21.7 1.0
CB Q:LYS213 3.7 29.2 1.0
CG Q:LYS227 3.8 26.3 1.0
C Q:LYS227 4.1 20.5 1.0
CD Q:LYS213 4.3 36.8 1.0
CG Q:LYS213 4.3 32.2 1.0
CD Q:LYS227 4.4 30.4 1.0
N Q:LYS213 4.4 22.7 1.0
CA Q:LYS213 4.4 25.6 1.0
C Q:GLY228 4.5 21.6 1.0
CA Q:GLY228 4.5 23.7 1.0
O Q:HOH594 4.5 21.4 1.0
O Q:THR209 4.6 27.2 1.0
OE2 R:GLU297 4.6 28.5 1.0
O Q:HOH776 4.7 34.9 1.0
O Q:HOH738 4.8 33.3 1.0
O Q:LEU226 4.9 21.2 1.0

Chlorine binding site 8 out of 11 in 7c5n

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Chlorine binding site 8 out of 11 in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl403

b:42.0
occ:1.00
 O Q:HOH716 2.6 40.0 1.0
N Q:LYS81 3.2 28.8 1.0
N Q:ALA80 3.3 29.0 1.0
O Q:HOH629 3.7 35.6 1.0
CB Q:ALA108 3.7 25.9 1.0
CG Q:LYS81 3.8 41.2 1.0
C Q:GLU79 3.8 31.1 1.0
CB Q:GLU79 3.8 33.5 1.0
CB Q:LYS81 3.9 36.4 1.0
CA Q:GLU79 4.0 32.7 1.0
CA Q:ALA80 4.0 30.2 1.0
C Q:ALA80 4.1 34.9 1.0
CE Q:LYS81 4.1 52.3 1.0
CB Q:ALA80 4.1 33.3 1.0
CA Q:LYS81 4.2 31.9 1.0
CE1 Q:TYR100 4.2 26.9 1.0
OH Q:TYR100 4.4 30.1 1.0
CD Q:LYS81 4.4 45.7 1.0
O Q:GLU79 4.7 29.7 1.0
CZ Q:TYR100 4.7 27.1 1.0
CG Q:GLU79 4.8 35.9 1.0
NZ Q:LYS81 4.9 54.4 1.0
OE2 Q:GLU79 4.9 47.8 1.0

Chlorine binding site 9 out of 11 in 7c5n

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Chlorine binding site 9 out of 11 in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl404

b:33.0
occ:1.00
 O Q:HOH535 3.1 22.7 1.0
O Q:HOH604 3.2 28.4 1.0
OG1 Q:THR180 3.2 18.7 1.0
O Q:HOH726 3.3 44.4 1.0
O2D Q:NAD401 3.6 29.2 1.0
CG2 Q:THR182 3.8 23.6 1.0
CB Q:THR180 3.8 19.9 1.0
C2D Q:NAD401 3.8 28.6 1.0
C2N Q:NAD401 3.9 29.8 1.0
CG2 Q:THR180 4.1 19.7 1.0
OG1 Q:THR182 4.3 24.9 1.0
NH1 Q:ARG232 4.3 23.0 1.0
C3N Q:NAD401 4.4 27.0 1.0
C7N Q:NAD401 4.4 30.3 1.0
O Q:HOH524 4.5 38.2 1.0
N1N Q:NAD401 4.5 31.1 1.0
O Q:HOH733 4.5 52.3 1.0
O7N Q:NAD401 4.6 26.6 1.0
CB Q:THR182 4.6 22.1 1.0
O Q:HOH746 4.7 40.4 1.0
N7N Q:NAD401 4.7 25.3 1.0
C1D Q:NAD401 4.7 29.7 1.0
O1N Q:NAD401 4.8 26.1 1.0
O Q:HOH618 5.0 38.2 1.0
O5D Q:NAD401 5.0 28.2 1.0

Chlorine binding site 10 out of 11 in 7c5n

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Chlorine binding site 10 out of 11 in the Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of C150A+H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli at 2.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cl402

b:29.5
occ:1.00
 O R:HOH675 3.0 30.0 1.0
O Q:HOH571 3.1 31.0 1.0
N R:GLY228 3.4 21.3 1.0
O R:HOH544 3.4 20.0 1.0
CB R:LYS227 3.6 25.8 1.0
O R:GLY228 3.6 24.2 1.0
CA R:LYS227 3.7 21.7 1.0
CG R:LYS227 3.8 27.3 1.0
CB R:LYS213 4.0 30.1 1.0
CD R:LYS227 4.0 30.0 1.0
C R:LYS227 4.1 22.4 1.0
CA R:GLY228 4.4 22.1 1.0
C R:GLY228 4.5 20.8 1.0
O R:HOH533 4.5 20.0 1.0
N R:LYS213 4.5 22.3 1.0
CA R:LYS213 4.6 24.1 1.0
O R:HOH723 4.6 39.1 1.0
OE2 Q:GLU297 4.6 30.4 1.0
O R:THR209 4.7 29.8 1.0
CG R:LYS213 4.7 31.5 1.0
O R:HOH720 4.7 34.3 1.0
O R:HOH614 4.7 40.4 1.0
CD R:LYS213 4.8 36.6 1.0
O R:HOH700 4.9 32.7 1.0
CE R:LYS227 5.0 31.1 1.0

Reference:

L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji. Crystal Structure of TYPE1 Glyceraldehyde-3-Phosphate Dehydrogenase From Escherichia Coli Provides New Insight Into Bpg Generation and Catalytic Mechanism To Be Published.
Page generated: Mon Jul 29 19:27:50 2024

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