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Chlorine in PDB 7c5o: Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution.

Protein crystallography data

The structure of Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution., PDB code: 7c5o was solved by L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.18 / 1.98
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.972, 89.972, 342.246, 90, 90, 90
R / Rfree (%) 14.6 / 19.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution. (pdb code 7c5o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution., PDB code: 7c5o:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7c5o

Go back to Chlorine Binding Sites List in 7c5o
Chlorine binding site 1 out of 5 in the Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl403

b:22.0
occ:1.00
 H O:GLY228 2.6 24.6 1.0
HB2 O:LYS213 2.8 28.7 1.0
HB3 O:LYS227 3.0 21.6 1.0
HA O:LYS227 3.0 24.8 1.0
O O:HOH797 3.1 33.8 1.0
O O:HOH719 3.1 21.9 1.0
O P:HOH520 3.2 19.8 1.0
HG2 O:LYS227 3.3 23.9 1.0
O O:HOH530 3.3 20.9 1.0
N O:GLY228 3.4 20.5 1.0
O O:GLY228 3.6 18.6 1.0
CB O:LYS227 3.6 18.0 1.0
CA O:LYS227 3.6 20.7 1.0
HD2 O:LYS213 3.7 39.2 1.0
CB O:LYS213 3.7 23.9 1.0
HB3 O:LYS213 3.8 28.7 1.0
CG O:LYS227 3.9 19.9 1.0
HD3 O:LYS227 3.9 25.5 1.0
C O:LYS227 4.0 21.2 1.0
H O:LYS213 4.1 21.8 1.0
HB3 O:ALA212 4.3 26.2 1.0
O O:HOH589 4.3 20.1 1.0
CD O:LYS227 4.5 21.2 1.0
C O:GLY228 4.5 18.7 1.0
HA O:LYS213 4.5 25.8 1.0
CD O:LYS213 4.5 32.6 1.0
N O:LYS213 4.5 18.2 1.0
O O:THR209 4.5 24.8 1.0
HB2 O:LYS227 4.5 21.6 1.0
CA O:LYS213 4.5 21.5 1.0
CA O:GLY228 4.5 20.7 1.0
CG O:LYS213 4.6 30.6 1.0
OE2 P:GLU297 4.6 22.0 1.0
O O:HOH766 4.7 26.9 1.0
HG3 O:LYS213 4.7 36.7 1.0
HG3 O:LYS227 4.7 23.9 1.0
O O:HOH807 4.7 34.6 1.0
HE2 O:LYS227 4.8 31.3 1.0
HD3 O:LYS213 4.9 39.2 1.0
O O:LEU226 4.9 18.7 1.0
N O:LYS227 5.0 20.8 1.0
O O:HOH799 5.0 28.7 1.0

Chlorine binding site 2 out of 5 in 7c5o

Go back to Chlorine Binding Sites List in 7c5o
Chlorine binding site 2 out of 5 in the Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution. within 5.0Å range:

Chlorine binding site 3 out of 5 in 7c5o

Go back to Chlorine Binding Sites List in 7c5o
Chlorine binding site 3 out of 5 in the Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl402

b:22.3
occ:1.00
 H P:GLY228 2.6 23.4 1.0
HB2 P:LYS213 2.7 30.5 1.0
HA P:LYS227 3.0 23.2 1.0
O P:HOH775 3.0 31.9 1.0
HB3 P:LYS227 3.1 25.4 1.0
HG2 P:LYS227 3.2 25.0 1.0
O O:HOH556 3.2 22.9 1.0
O P:HOH718 3.2 26.0 1.0
O P:HOH519 3.2 21.0 1.0
N P:GLY228 3.4 19.5 1.0
HD2 P:LYS213 3.5 34.1 1.0
O P:GLY228 3.5 19.6 1.0
CB P:LYS227 3.6 21.1 1.0
CA P:LYS227 3.6 19.4 1.0
CB P:LYS213 3.7 25.4 1.0
CG P:LYS227 3.8 20.9 1.0
H P:LYS213 4.0 23.9 1.0
HD3 P:LYS227 4.0 29.4 1.0
C P:LYS227 4.0 18.8 1.0
HB3 P:LYS213 4.1 30.5 1.0
O P:HOH562 4.2 17.1 1.0
CD P:LYS213 4.3 28.4 1.0
HA P:LYS213 4.3 25.1 1.0
N P:LYS213 4.4 19.9 1.0
C P:GLY228 4.4 19.6 1.0
CA P:LYS213 4.4 20.9 1.0
HB3 P:ALA212 4.5 27.9 1.0
CG P:LYS213 4.5 28.4 1.0
CD P:LYS227 4.5 24.5 1.0
CA P:GLY228 4.5 21.2 1.0
OE1 O:GLU297 4.5 26.8 1.0
HD3 P:LYS213 4.6 34.1 1.0
HB2 P:LYS227 4.6 25.4 1.0
HG3 P:LYS213 4.6 34.1 1.0
O P:THR209 4.6 22.6 1.0
O P:HOH781 4.6 35.2 1.0
HG3 P:LYS227 4.7 25.0 1.0
O P:HOH746 4.8 29.7 1.0
HE2 P:LYS227 4.8 32.5 1.0
O P:HOH568 4.8 35.0 1.0
O P:HOH778 4.9 36.3 1.0
O P:LEU226 4.9 21.2 1.0
O O:HOH808 4.9 32.1 1.0
N P:LYS227 5.0 20.2 1.0

Chlorine binding site 4 out of 5 in 7c5o

Go back to Chlorine Binding Sites List in 7c5o
Chlorine binding site 4 out of 5 in the Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl402

b:25.2
occ:1.00
 H Q:GLY228 2.6 26.5 1.0
HB2 Q:LYS213 2.8 32.1 1.0
O Q:HOH774 2.9 33.0 1.0
HB3 Q:LYS227 3.0 25.1 1.0
HA Q:LYS227 3.0 22.2 1.0
O Q:HOH705 3.1 29.9 1.0
HG2 Q:LYS227 3.1 27.6 1.0
O R:HOH536 3.2 21.6 1.0
O Q:HOH578 3.3 21.7 1.0
N Q:GLY228 3.4 22.1 1.0
CB Q:LYS227 3.6 20.9 1.0
O Q:GLY228 3.6 20.5 1.0
CA Q:LYS227 3.7 18.5 1.0
CB Q:LYS213 3.8 26.7 1.0
HD2 Q:LYS213 3.8 41.8 1.0
CG Q:LYS227 3.8 23.0 1.0
H Q:LYS213 4.0 26.1 1.0
C Q:LYS227 4.0 22.9 1.0
HB3 Q:LYS213 4.1 32.1 1.0
HD3 Q:LYS227 4.2 31.9 1.0
HB3 Q:ALA212 4.3 28.5 1.0
O Q:HOH542 4.4 18.6 1.0
N Q:LYS213 4.4 21.7 1.0
HA Q:LYS213 4.4 27.9 1.0
C Q:GLY228 4.5 19.3 1.0
CD Q:LYS213 4.5 34.8 1.0
CA Q:LYS213 4.5 23.2 1.0
HB2 Q:LYS227 4.5 25.1 1.0
CA Q:GLY228 4.5 26.3 1.0
CD Q:LYS227 4.6 26.6 1.0
O Q:THR209 4.6 27.2 1.0
CG Q:LYS213 4.6 31.2 1.0
OE2 R:GLU297 4.6 27.5 1.0
HG3 Q:LYS227 4.6 27.6 1.0
HG3 Q:LYS213 4.6 37.5 1.0
O Q:HOH736 4.6 31.4 1.0
O Q:HOH775 4.7 38.0 1.0
HE2 Q:LYS227 4.7 32.3 1.0
HD3 Q:LYS213 4.7 41.8 1.0
O Q:HOH656 4.8 36.4 1.0
O Q:HOH780 4.9 37.6 1.0
O Q:LEU226 5.0 21.7 1.0
O Q:HOH773 5.0 32.8 1.0
N Q:LYS227 5.0 21.4 1.0

Chlorine binding site 5 out of 5 in 7c5o

Go back to Chlorine Binding Sites List in 7c5o
Chlorine binding site 5 out of 5 in the Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of H177A Mutant of Glyceraldehyde-3-Phosphate- DEHYDROGENASE1 From Escherichia Coli Complexed with Nad at 1.98 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cl402

b:28.1
occ:1.00
 H R:GLY228 2.7 29.9 1.0
HB2 R:LYS213 3.0 37.3 1.0
HG2 R:LYS227 3.0 33.2 1.0
HA R:LYS227 3.1 27.5 1.0
HB3 R:LYS227 3.2 27.2 1.0
O Q:HOH576 3.2 29.3 1.0
O R:HOH660 3.2 34.7 1.0
O R:HOH506 3.4 21.7 1.0
N R:GLY228 3.5 24.9 1.0
O R:GLY228 3.6 20.6 1.0
CB R:LYS227 3.6 22.7 1.0
CG R:LYS227 3.7 27.7 1.0
CA R:LYS227 3.7 22.9 1.0
HD3 R:LYS227 3.7 37.2 1.0
CB R:LYS213 3.9 31.1 1.0
HD2 R:LYS213 4.0 49.9 1.0
H R:LYS213 4.1 33.1 1.0
C R:LYS227 4.1 25.6 1.0
CD R:LYS227 4.2 31.0 1.0
O R:HOH518 4.3 21.1 1.0
HB3 R:LYS213 4.4 37.3 1.0
HG3 R:LYS213 4.4 47.7 1.0
HB3 R:ALA212 4.4 31.1 1.0
HA R:LYS213 4.5 34.7 1.0
HG3 R:LYS227 4.5 33.2 1.0
C R:GLY228 4.5 22.1 1.0
O R:THR209 4.5 30.2 1.0
N R:LYS213 4.5 27.6 1.0
HB2 R:LYS227 4.6 27.2 1.0
CG R:LYS213 4.6 39.7 1.0
CA R:GLY228 4.6 21.5 1.0
CA R:LYS213 4.6 28.9 1.0
OE2 Q:GLU297 4.6 25.7 1.0
HE2 R:LYS227 4.7 35.2 1.0
HE3 R:LYS213 4.7 53.6 1.0
CD R:LYS213 4.7 41.6 1.0
O R:HOH677 4.8 31.0 1.0
O R:HOH640 4.9 36.1 1.0
O Q:HOH772 4.9 27.3 1.0
HD2 R:LYS227 5.0 37.2 1.0
O R:LEU226 5.0 23.7 1.0

Reference:

L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji. Crystal Structure of TYPE1 Glyceraldehyde-3-Phosphate Dehydrogenase From Escherichia Coli Provides New Insight Into Bpg Generation and Catalytic Mechanism To Be Published.
Page generated: Mon Jul 29 19:27:53 2024

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