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Chlorine in PDB 7c5p: Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution.

Protein crystallography data

The structure of Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution., PDB code: 7c5p was solved by L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.35
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 90.339, 90.339, 341.547, 90, 90, 90
R / Rfree (%) 15.5 / 21

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution. (pdb code 7c5p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution., PDB code: 7c5p:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7c5p

Go back to Chlorine Binding Sites List in 7c5p
Chlorine binding site 1 out of 5 in the Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl405

b:30.1
occ:1.00
 O O:HOH663 3.1 23.2 1.0
O P:HOH594 3.1 30.1 1.0
O O:HOH540 3.3 24.8 1.0
N O:GLY228 3.4 24.9 1.0
O O:GLY228 3.5 22.1 1.0
CA O:LYS227 3.7 25.6 1.0
CB O:LYS227 3.7 25.9 1.0
CG O:LYS213 3.8 31.9 1.0
CG O:LYS227 3.9 27.8 1.0
CB O:LYS213 3.9 31.0 1.0
C O:LYS227 4.0 25.8 1.0
CD O:LYS227 4.3 27.9 1.0
O O:HOH545 4.4 18.7 1.0
C O:GLY228 4.4 23.9 1.0
CD O:LYS213 4.5 34.6 1.0
N O:LYS213 4.5 25.8 1.0
CA O:LYS213 4.5 31.2 1.0
CA O:GLY228 4.5 25.2 1.0
O O:THR209 4.6 27.0 1.0
OE2 P:GLU297 4.6 30.8 1.0
O O:HOH673 4.7 29.6 1.0
O O:LEU226 4.9 26.0 1.0
N O:LYS227 5.0 23.8 1.0

Chlorine binding site 2 out of 5 in 7c5p

Go back to Chlorine Binding Sites List in 7c5p
Chlorine binding site 2 out of 5 in the Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl406

b:32.0
occ:1.00
 O O:HOH547 3.0 32.6 1.0
NH1 O:ARG232 3.0 25.6 1.0
NE O:ARG232 3.1 26.8 1.0
O O:HOH639 3.5 38.2 1.0
CB O:ALA230 3.5 24.1 1.0
CZ O:ARG232 3.5 26.8 1.0
CD2 O:HIS177 3.7 25.1 1.0
CD2 O:HIS207 3.7 34.1 1.0
CG O:HIS177 3.8 22.1 1.0
NE2 O:HIS177 4.1 25.2 1.0
CB O:HIS177 4.2 21.5 1.0
CB O:THR209 4.2 26.7 1.0
ND1 O:HIS177 4.2 22.5 1.0
CD O:ARG232 4.3 26.8 1.0
OG1 O:THR151 4.3 21.1 1.0
CE1 O:HIS177 4.4 22.7 1.0
NE2 O:HIS207 4.5 33.4 1.0
OG1 O:THR209 4.5 27.7 1.0
CG2 O:THR175 4.5 21.6 1.0
CG2 O:THR209 4.6 25.1 1.0
CG O:HIS207 4.7 33.1 1.0
O O:THR208 4.8 26.5 1.0
NH2 O:ARG232 4.9 26.6 1.0
CG O:ARG232 4.9 26.4 1.0
CA O:ALA230 5.0 25.4 1.0

Chlorine binding site 3 out of 5 in 7c5p

Go back to Chlorine Binding Sites List in 7c5p
Chlorine binding site 3 out of 5 in the Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl404

b:33.1
occ:1.00
 O P:HOH653 2.7 41.8 1.0
O P:HOH562 3.1 28.5 1.0
O O:HOH502 3.1 33.2 1.0
O P:HOH638 3.2 34.1 1.0
N P:GLY228 3.4 25.6 1.0
O P:GLY228 3.4 22.0 1.0
CB P:LYS227 3.7 27.7 1.0
CA P:LYS227 3.7 27.0 1.0
CB P:LYS213 3.9 36.6 1.0
CG P:LYS227 4.0 28.9 1.0
C P:LYS227 4.0 27.4 1.0
C P:GLY228 4.3 23.6 1.0
O P:HOH557 4.4 20.8 1.0
OE1 O:GLU297 4.4 38.9 1.0
CA P:GLY228 4.4 26.0 1.0
N P:LYS213 4.5 31.7 1.0
CD P:LYS227 4.5 31.2 1.0
CG P:LYS213 4.5 38.2 1.0
CA P:LYS213 4.6 33.9 1.0
O P:THR209 4.6 28.1 1.0
CD P:LYS213 4.6 38.7 1.0
O P:HOH660 4.8 36.6 1.0

Chlorine binding site 4 out of 5 in 7c5p

Go back to Chlorine Binding Sites List in 7c5p
Chlorine binding site 4 out of 5 in the Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl405

b:39.7
occ:1.00
 O P:HOH519 3.0 36.8 1.0
NE P:ARG232 3.1 24.4 1.0
NH1 P:ARG232 3.3 23.7 1.0
CB P:ALA230 3.4 20.8 1.0
CD2 P:HIS177 3.5 25.6 1.0
CZ P:ARG232 3.7 24.0 1.0
ND1 P:HIS207 3.7 47.9 1.0
CG P:HIS177 3.8 23.8 1.0
NE2 P:HIS177 4.1 26.0 1.0
CB P:HIS177 4.2 23.4 1.0
CB P:THR209 4.2 33.6 1.0
CD P:ARG232 4.2 23.0 1.0
CE1 P:HIS207 4.2 48.0 1.0
ND1 P:HIS177 4.4 24.5 1.0
OG1 P:THR151 4.4 23.1 1.0
CG2 P:THR175 4.5 26.7 1.0
CE1 P:HIS177 4.5 23.6 1.0
CG2 P:THR209 4.6 31.3 1.0
OG1 P:THR209 4.7 35.4 1.0
CG P:HIS207 4.7 42.4 1.0
O P:THR208 4.9 34.5 1.0
CA P:ALA230 4.9 20.9 1.0

Chlorine binding site 5 out of 5 in 7c5p

Go back to Chlorine Binding Sites List in 7c5p
Chlorine binding site 5 out of 5 in the Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure Glyceraldehyde-3-Phosphate-DEHYDROGENASE1 From Escherichia Coli Complexed with G3P at 2.35 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl404

b:33.2
occ:1.00
 O Q:HOH631 2.8 42.9 1.0
O R:HOH518 3.0 33.6 1.0
N Q:GLY228 3.3 26.1 1.0
O Q:GLY228 3.3 24.4 1.0
O Q:HOH536 3.4 29.0 1.0
CB Q:LYS227 3.6 29.8 1.0
CA Q:LYS227 3.6 29.1 1.0
CG Q:LYS227 3.9 31.4 1.0
CB Q:LYS213 3.9 38.0 1.0
C Q:LYS227 4.0 26.9 1.0
C Q:GLY228 4.2 25.9 1.0
O Q:HOH504 4.3 24.7 1.0
CA Q:GLY228 4.3 27.1 1.0
OE2 R:GLU297 4.3 38.5 1.0
CD Q:LYS227 4.5 34.1 1.0
CG Q:LYS213 4.5 38.9 1.0
N Q:LYS213 4.5 34.4 1.0
CD Q:LYS213 4.6 40.8 1.0
CA Q:LYS213 4.6 34.6 1.0
O Q:THR209 4.7 36.2 1.0
O Q:HOH651 5.0 43.5 1.0

Reference:

L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji. Crystal Structure of TYPE1 Glyceraldehyde-3-Phosphate Dehydrogenase From Escherichia Coli Provides New Insight Into Bpg Generation and Catalytic Mechanism To Be Published.
Page generated: Mon Jul 29 19:29:06 2024

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