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Chlorine in PDB 7c5r: Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution, PDB code: 7c5r was solved by L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.31
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.398, 89.398, 340.821, 90, 90, 90
R / Rfree (%) 14.7 / 20.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution (pdb code 7c5r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution, PDB code: 7c5r:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 7c5r

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Chlorine binding site 1 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl406

b:28.1
occ:1.00
 O O:HOH757 3.0 34.2 1.0
O O:HOH571 3.1 24.4 1.0
O O:HOH711 3.1 19.9 1.0
O P:HOH531 3.2 24.0 1.0
N O:GLY228 3.4 21.9 1.0
O O:GLY228 3.5 18.7 1.0
CB O:LYS227 3.7 23.8 1.0
CA O:LYS227 3.7 22.5 1.0
CB O:LYS213 3.8 32.4 1.0
CG O:LYS227 3.8 25.7 1.0
C O:LYS227 4.1 22.1 1.0
O O:HOH523 4.2 18.0 1.0
C O:GLY228 4.4 20.5 1.0
CD O:LYS213 4.4 38.0 1.0
N O:LYS213 4.4 24.2 1.0
CD O:LYS227 4.4 27.4 1.0
CA O:LYS213 4.4 28.3 1.0
CA O:GLY228 4.4 21.2 1.0
O O:THR209 4.5 21.7 1.0
CG O:LYS213 4.5 36.8 1.0
OE2 P:GLU297 4.7 22.2 1.0
O O:HOH727 4.8 22.0 1.0
O O:HOH730 4.9 33.8 1.0
O O:LEU226 5.0 21.3 1.0

Chlorine binding site 2 out of 8 in 7c5r

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Chlorine binding site 2 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl407

b:27.3
occ:1.00
 O O:HOH560 3.0 25.6 1.0
O O:HOH767 3.2 32.2 1.0
N O:LYS81 3.4 22.7 1.0
N O:ALA80 3.5 22.9 1.0
CB O:ALA108 3.6 21.3 1.0
CB O:LYS81 3.8 25.6 1.0
CG O:LYS81 3.9 29.0 1.0
CE1 O:TYR100 4.0 18.3 1.0
C O:GLU79 4.0 23.3 1.0
CB O:GLU79 4.0 26.8 1.0
CA O:ALA80 4.2 22.9 1.0
CD O:LYS81 4.2 32.3 1.0
CB O:ALA80 4.2 22.6 1.0
CA O:GLU79 4.2 24.6 1.0
CA O:LYS81 4.2 24.0 1.0
C O:ALA80 4.3 23.1 1.0
OH O:TYR100 4.6 18.1 1.0
CZ O:TYR100 4.7 19.5 1.0
O O:GLU79 4.8 21.1 1.0
CD1 O:TYR100 4.9 18.8 1.0
CG O:GLU79 5.0 28.6 1.0

Chlorine binding site 3 out of 8 in 7c5r

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Chlorine binding site 3 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl408

b:34.1
occ:1.00
 NH1 O:ARG232 3.1 23.6 1.0
O1 O:DG4402 3.1 42.9 0.8
NE O:ARG232 3.1 23.0 1.0
C1 O:DG4402 3.4 50.1 0.8
CB O:ALA230 3.5 18.3 1.0
CD2 O:HIS207 3.5 32.6 1.0
CZ O:ARG232 3.6 24.2 1.0
CD2 O:HIS177 3.6 24.4 1.0
O1P O:DG4402 3.8 52.6 0.8
NE2 O:HIS177 3.9 26.4 1.0
C3 O:DG4402 4.0 43.5 0.8
CG O:HIS177 4.0 23.6 1.0
C2 O:DG4402 4.0 43.2 0.8
O2 O:DG4402 4.0 50.6 0.8
CB O:THR209 4.1 25.1 1.0
CD O:ARG232 4.3 23.5 1.0
NE2 O:HIS207 4.4 34.5 1.0
CG O:HIS207 4.5 30.2 1.0
CE1 O:HIS177 4.5 24.1 1.0
ND1 O:HIS177 4.5 24.0 1.0
OG1 O:THR151 4.5 21.5 1.0
CB O:HIS177 4.6 23.5 1.0
CG2 O:THR209 4.6 26.6 1.0
OG1 O:THR209 4.6 26.9 1.0
O O:THR208 4.6 25.0 1.0
CG2 O:THR175 4.7 19.2 1.0
CB O:HIS207 4.9 26.1 1.0
NH2 O:ARG232 4.9 25.5 1.0
CA O:ALA230 4.9 20.1 1.0

Chlorine binding site 4 out of 8 in 7c5r

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Chlorine binding site 4 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl405

b:29.4
occ:1.00
 O O:HOH540 3.0 33.9 1.0
O P:HOH705 3.1 28.8 1.0
O P:HOH577 3.2 25.5 1.0
O P:HOH727 3.2 39.8 1.0
N P:GLY228 3.3 21.5 1.0
O P:GLY228 3.4 23.6 1.0
CB P:LYS227 3.6 23.8 1.0
CA P:LYS227 3.7 23.5 1.0
CB P:LYS213 3.8 34.7 1.0
C P:LYS227 4.0 22.1 1.0
CG P:LYS227 4.0 23.9 1.0
O P:HOH557 4.2 24.6 1.0
C P:GLY228 4.3 21.5 1.0
CA P:GLY228 4.3 21.4 1.0
OE1 O:GLU297 4.4 29.4 1.0
CG P:LYS213 4.4 35.5 1.0
CD P:LYS227 4.5 26.0 1.0
N P:LYS213 4.5 27.5 1.0
O P:THR209 4.6 32.2 1.0
CA P:LYS213 4.6 32.0 1.0
CD P:LYS213 4.6 37.5 1.0
O P:HOH707 4.7 33.9 1.0
O O:HOH763 4.8 27.3 1.0
O P:HOH734 4.9 35.9 1.0
O P:HOH668 5.0 39.1 1.0

Chlorine binding site 5 out of 8 in 7c5r

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Chlorine binding site 5 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl405

b:45.8
occ:1.00
 N Q:LYS81 3.3 34.4 1.0
N Q:ALA80 3.4 32.1 1.0
O Q:HOH618 3.4 28.8 1.0
CB Q:ALA108 3.6 31.4 1.0
CB Q:LYS81 3.8 37.5 1.0
C Q:GLU79 3.9 33.1 1.0
CB Q:GLU79 3.9 33.7 1.0
CG Q:LYS81 4.0 39.6 1.0
CA Q:ALA80 4.0 33.6 1.0
CA Q:GLU79 4.1 35.5 1.0
C Q:ALA80 4.1 34.8 1.0
CB Q:ALA80 4.1 35.7 1.0
CE1 Q:TYR100 4.1 23.9 1.0
CA Q:LYS81 4.1 35.8 1.0
CD Q:LYS81 4.1 43.3 1.0
OH Q:TYR100 4.5 25.2 1.0
O Q:GLU79 4.7 38.6 1.0
CZ Q:TYR100 4.8 25.1 1.0
OE2 Q:GLU79 4.8 41.8 1.0
CG Q:GLU79 4.9 37.1 1.0
CE Q:LYS81 5.0 44.6 1.0

Chlorine binding site 6 out of 8 in 7c5r

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Chlorine binding site 6 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl406

b:27.8
occ:1.00
 O Q:HOH683 2.9 28.0 1.0
O R:HOH512 3.1 27.0 1.0
N Q:GLY228 3.3 22.4 1.0
O Q:HOH539 3.4 23.7 1.0
O Q:GLY228 3.4 21.7 1.0
CB Q:LYS227 3.6 25.6 1.0
CA Q:LYS227 3.7 23.6 1.0
CG Q:LYS227 3.7 27.8 1.0
CB Q:LYS213 3.9 32.9 1.0
C Q:LYS227 4.0 23.5 1.0
O Q:HOH507 4.2 17.5 1.0
CD Q:LYS227 4.3 29.1 1.0
C Q:GLY228 4.3 22.4 1.0
CA Q:GLY228 4.4 24.1 1.0
OE2 R:GLU297 4.4 24.8 1.0
CG Q:LYS213 4.4 35.9 1.0
CD Q:LYS213 4.5 38.4 1.0
N Q:LYS213 4.6 26.8 1.0
O Q:THR209 4.6 30.8 1.0
CA Q:LYS213 4.6 29.4 1.0
O Q:HOH703 4.8 27.0 1.0

Chlorine binding site 7 out of 8 in 7c5r

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Chlorine binding site 7 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl407

b:30.3
occ:1.00
 O Q:HOH519 2.8 24.7 1.0
NH1 Q:ARG232 3.2 20.6 1.0
NE Q:ARG232 3.3 18.0 1.0
CB Q:ALA230 3.5 16.6 1.0
CD2 Q:HIS177 3.5 24.1 1.0
CD2 Q:HIS207 3.7 28.0 1.0
CZ Q:ARG232 3.8 19.7 1.0
NE2 Q:HIS177 3.8 23.6 1.0
CB Q:THR209 4.0 31.2 1.0
CG Q:HIS177 4.0 23.9 1.0
OG1 Q:THR151 4.3 21.8 1.0
OG1 Q:THR209 4.4 34.0 1.0
CE1 Q:HIS177 4.4 23.4 1.0
NE2 Q:HIS207 4.5 28.9 1.0
CG2 Q:THR209 4.5 31.3 1.0
ND1 Q:HIS177 4.5 24.0 1.0
CD Q:ARG232 4.5 20.1 1.0
CB Q:HIS177 4.5 22.4 1.0
CG2 Q:THR175 4.6 17.7 1.0
O1 Q:G3H402 4.7 36.1 0.5
O Q:THR208 4.7 28.4 1.0
C1 Q:G3H402 4.7 35.5 0.5
CG Q:HIS207 4.7 26.8 1.0
O1 Q:G3H402 4.8 34.2 0.5
C3 Q:G3H402 4.8 36.5 0.5
O1P Q:G3H402 4.9 29.2 0.5
C1 Q:G3H402 4.9 34.3 0.5
CA Q:ALA230 4.9 17.9 1.0

Chlorine binding site 8 out of 8 in 7c5r

Go back to Chlorine Binding Sites List in 7c5r
Chlorine binding site 8 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cl406

b:34.3
occ:1.00
 O R:HOH635 3.0 21.5 1.0
O Q:HOH554 3.1 28.4 1.0
N R:GLY228 3.4 25.2 1.0
O R:HOH509 3.5 32.8 1.0
O R:GLY228 3.5 25.9 1.0
CB R:LYS227 3.6 25.6 1.0
CA R:LYS227 3.7 26.4 1.0
CG R:LYS227 3.8 25.7 1.0
C R:LYS227 4.0 26.7 1.0
CB R:LYS213 4.1 40.8 1.0
CD R:LYS227 4.2 27.2 1.0
CD R:LYS213 4.3 45.7 1.0
C R:GLY228 4.4 26.4 1.0
O R:HOH592 4.4 24.7 1.0
CG R:LYS213 4.4 42.5 1.0
CA R:GLY228 4.5 25.6 1.0
OE2 Q:GLU297 4.5 25.1 1.0
O R:HOH653 4.6 37.4 1.0
N R:LYS213 4.6 36.7 1.0
O R:THR209 4.6 36.8 1.0
O R:HOH641 4.6 30.3 1.0
CA R:LYS213 4.7 38.7 1.0

Reference:

L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji. Crystal Structure of TYPE1 Glyceraldehyde-3-Phosphate Dehydrogenase From Escherichia Coli Provides New Insight Into Bpg Generation and Catalytic Mechanism To Be Published.
Page generated: Mon Jul 29 19:30:48 2024

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