Atomistry » Chlorine » PDB 7c15-7c6z » 7c5r
Atomistry »
  Chlorine »
    PDB 7c15-7c6z »
      7c5r »

Chlorine in PDB 7c5r: Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution, PDB code: 7c5r was solved by L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.31
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.398, 89.398, 340.821, 90, 90, 90
R / Rfree (%) 14.7 / 20.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution (pdb code 7c5r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution, PDB code: 7c5r:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 7c5r

Go back to Chlorine Binding Sites List in 7c5r
Chlorine binding site 1 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl406

b:28.1
occ:1.00
 O O:HOH757 3.0 34.2 1.0
O O:HOH571 3.1 24.4 1.0
O O:HOH711 3.1 19.9 1.0
O P:HOH531 3.2 24.0 1.0
N O:GLY228 3.4 21.9 1.0
O O:GLY228 3.5 18.7 1.0
CB O:LYS227 3.7 23.8 1.0
CA O:LYS227 3.7 22.5 1.0
CB O:LYS213 3.8 32.4 1.0
CG O:LYS227 3.8 25.7 1.0
C O:LYS227 4.1 22.1 1.0
O O:HOH523 4.2 18.0 1.0
C O:GLY228 4.4 20.5 1.0
CD O:LYS213 4.4 38.0 1.0
N O:LYS213 4.4 24.2 1.0
CD O:LYS227 4.4 27.4 1.0
CA O:LYS213 4.4 28.3 1.0
CA O:GLY228 4.4 21.2 1.0
O O:THR209 4.5 21.7 1.0
CG O:LYS213 4.5 36.8 1.0
OE2 P:GLU297 4.7 22.2 1.0
O O:HOH727 4.8 22.0 1.0
O O:HOH730 4.9 33.8 1.0
O O:LEU226 5.0 21.3 1.0

Chlorine binding site 2 out of 8 in 7c5r

Go back to Chlorine Binding Sites List in 7c5r
Chlorine binding site 2 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl407

b:27.3
occ:1.00
 O O:HOH560 3.0 25.6 1.0
O O:HOH767 3.2 32.2 1.0
N O:LYS81 3.4 22.7 1.0
N O:ALA80 3.5 22.9 1.0
CB O:ALA108 3.6 21.3 1.0
CB O:LYS81 3.8 25.6 1.0
CG O:LYS81 3.9 29.0 1.0
CE1 O:TYR100 4.0 18.3 1.0
C O:GLU79 4.0 23.3 1.0
CB O:GLU79 4.0 26.8 1.0
CA O:ALA80 4.2 22.9 1.0
CD O:LYS81 4.2 32.3 1.0
CB O:ALA80 4.2 22.6 1.0
CA O:GLU79 4.2 24.6 1.0
CA O:LYS81 4.2 24.0 1.0
C O:ALA80 4.3 23.1 1.0
OH O:TYR100 4.6 18.1 1.0
CZ O:TYR100 4.7 19.5 1.0
O O:GLU79 4.8 21.1 1.0
CD1 O:TYR100 4.9 18.8 1.0
CG O:GLU79 5.0 28.6 1.0

Chlorine binding site 3 out of 8 in 7c5r

Go back to Chlorine Binding Sites List in 7c5r
Chlorine binding site 3 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl408

b:34.1
occ:1.00
 NH1 O:ARG232 3.1 23.6 1.0
O1 O:DG4402 3.1 42.9 0.8
NE O:ARG232 3.1 23.0 1.0
C1 O:DG4402 3.4 50.1 0.8
CB O:ALA230 3.5 18.3 1.0
CD2 O:HIS207 3.5 32.6 1.0
CZ O:ARG232 3.6 24.2 1.0
CD2 O:HIS177 3.6 24.4 1.0
O1P O:DG4402 3.8 52.6 0.8
NE2 O:HIS177 3.9 26.4 1.0
C3 O:DG4402 4.0 43.5 0.8
CG O:HIS177 4.0 23.6 1.0
C2 O:DG4402 4.0 43.2 0.8
O2 O:DG4402 4.0 50.6 0.8
CB O:THR209 4.1 25.1 1.0
CD O:ARG232 4.3 23.5 1.0
NE2 O:HIS207 4.4 34.5 1.0
CG O:HIS207 4.5 30.2 1.0
CE1 O:HIS177 4.5 24.1 1.0
ND1 O:HIS177 4.5 24.0 1.0
OG1 O:THR151 4.5 21.5 1.0
CB O:HIS177 4.6 23.5 1.0
CG2 O:THR209 4.6 26.6 1.0
OG1 O:THR209 4.6 26.9 1.0
O O:THR208 4.6 25.0 1.0
CG2 O:THR175 4.7 19.2 1.0
CB O:HIS207 4.9 26.1 1.0
NH2 O:ARG232 4.9 25.5 1.0
CA O:ALA230 4.9 20.1 1.0

Chlorine binding site 4 out of 8 in 7c5r

Go back to Chlorine Binding Sites List in 7c5r
Chlorine binding site 4 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cl405

b:29.4
occ:1.00
 O O:HOH540 3.0 33.9 1.0
O P:HOH705 3.1 28.8 1.0
O P:HOH577 3.2 25.5 1.0
O P:HOH727 3.2 39.8 1.0
N P:GLY228 3.3 21.5 1.0
O P:GLY228 3.4 23.6 1.0
CB P:LYS227 3.6 23.8 1.0
CA P:LYS227 3.7 23.5 1.0
CB P:LYS213 3.8 34.7 1.0
C P:LYS227 4.0 22.1 1.0
CG P:LYS227 4.0 23.9 1.0
O P:HOH557 4.2 24.6 1.0
C P:GLY228 4.3 21.5 1.0
CA P:GLY228 4.3 21.4 1.0
OE1 O:GLU297 4.4 29.4 1.0
CG P:LYS213 4.4 35.5 1.0
CD P:LYS227 4.5 26.0 1.0
N P:LYS213 4.5 27.5 1.0
O P:THR209 4.6 32.2 1.0
CA P:LYS213 4.6 32.0 1.0
CD P:LYS213 4.6 37.5 1.0
O P:HOH707 4.7 33.9 1.0
O O:HOH763 4.8 27.3 1.0
O P:HOH734 4.9 35.9 1.0
O P:HOH668 5.0 39.1 1.0

Chlorine binding site 5 out of 8 in 7c5r

Go back to Chlorine Binding Sites List in 7c5r
Chlorine binding site 5 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl405

b:45.8
occ:1.00
 N Q:LYS81 3.3 34.4 1.0
N Q:ALA80 3.4 32.1 1.0
O Q:HOH618 3.4 28.8 1.0
CB Q:ALA108 3.6 31.4 1.0
CB Q:LYS81 3.8 37.5 1.0
C Q:GLU79 3.9 33.1 1.0
CB Q:GLU79 3.9 33.7 1.0
CG Q:LYS81 4.0 39.6 1.0
CA Q:ALA80 4.0 33.6 1.0
CA Q:GLU79 4.1 35.5 1.0
C Q:ALA80 4.1 34.8 1.0
CB Q:ALA80 4.1 35.7 1.0
CE1 Q:TYR100 4.1 23.9 1.0
CA Q:LYS81 4.1 35.8 1.0
CD Q:LYS81 4.1 43.3 1.0
OH Q:TYR100 4.5 25.2 1.0
O Q:GLU79 4.7 38.6 1.0
CZ Q:TYR100 4.8 25.1 1.0
OE2 Q:GLU79 4.8 41.8 1.0
CG Q:GLU79 4.9 37.1 1.0
CE Q:LYS81 5.0 44.6 1.0

Chlorine binding site 6 out of 8 in 7c5r

Go back to Chlorine Binding Sites List in 7c5r
Chlorine binding site 6 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl406

b:27.8
occ:1.00
 O Q:HOH683 2.9 28.0 1.0
O R:HOH512 3.1 27.0 1.0
N Q:GLY228 3.3 22.4 1.0
O Q:HOH539 3.4 23.7 1.0
O Q:GLY228 3.4 21.7 1.0
CB Q:LYS227 3.6 25.6 1.0
CA Q:LYS227 3.7 23.6 1.0
CG Q:LYS227 3.7 27.8 1.0
CB Q:LYS213 3.9 32.9 1.0
C Q:LYS227 4.0 23.5 1.0
O Q:HOH507 4.2 17.5 1.0
CD Q:LYS227 4.3 29.1 1.0
C Q:GLY228 4.3 22.4 1.0
CA Q:GLY228 4.4 24.1 1.0
OE2 R:GLU297 4.4 24.8 1.0
CG Q:LYS213 4.4 35.9 1.0
CD Q:LYS213 4.5 38.4 1.0
N Q:LYS213 4.6 26.8 1.0
O Q:THR209 4.6 30.8 1.0
CA Q:LYS213 4.6 29.4 1.0
O Q:HOH703 4.8 27.0 1.0

Chlorine binding site 7 out of 8 in 7c5r

Go back to Chlorine Binding Sites List in 7c5r
Chlorine binding site 7 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl407

b:30.3
occ:1.00
 O Q:HOH519 2.8 24.7 1.0
NH1 Q:ARG232 3.2 20.6 1.0
NE Q:ARG232 3.3 18.0 1.0
CB Q:ALA230 3.5 16.6 1.0
CD2 Q:HIS177 3.5 24.1 1.0
CD2 Q:HIS207 3.7 28.0 1.0
CZ Q:ARG232 3.8 19.7 1.0
NE2 Q:HIS177 3.8 23.6 1.0
CB Q:THR209 4.0 31.2 1.0
CG Q:HIS177 4.0 23.9 1.0
OG1 Q:THR151 4.3 21.8 1.0
OG1 Q:THR209 4.4 34.0 1.0
CE1 Q:HIS177 4.4 23.4 1.0
NE2 Q:HIS207 4.5 28.9 1.0
CG2 Q:THR209 4.5 31.3 1.0
ND1 Q:HIS177 4.5 24.0 1.0
CD Q:ARG232 4.5 20.1 1.0
CB Q:HIS177 4.5 22.4 1.0
CG2 Q:THR175 4.6 17.7 1.0
O1 Q:G3H402 4.7 36.1 0.5
O Q:THR208 4.7 28.4 1.0
C1 Q:G3H402 4.7 35.5 0.5
CG Q:HIS207 4.7 26.8 1.0
O1 Q:G3H402 4.8 34.2 0.5
C3 Q:G3H402 4.8 36.5 0.5
O1P Q:G3H402 4.9 29.2 0.5
C1 Q:G3H402 4.9 34.3 0.5
CA Q:ALA230 4.9 17.9 1.0

Chlorine binding site 8 out of 8 in 7c5r

Go back to Chlorine Binding Sites List in 7c5r
Chlorine binding site 8 out of 8 in the Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of C150S Mutant Glyceraldehyde-3-Phosphate DEHYDROGENASE1 From Escherichia Coli Complexed with Bpg at 2.31 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cl406

b:34.3
occ:1.00
 O R:HOH635 3.0 21.5 1.0
O Q:HOH554 3.1 28.4 1.0
N R:GLY228 3.4 25.2 1.0
O R:HOH509 3.5 32.8 1.0
O R:GLY228 3.5 25.9 1.0
CB R:LYS227 3.6 25.6 1.0
CA R:LYS227 3.7 26.4 1.0
CG R:LYS227 3.8 25.7 1.0
C R:LYS227 4.0 26.7 1.0
CB R:LYS213 4.1 40.8 1.0
CD R:LYS227 4.2 27.2 1.0
CD R:LYS213 4.3 45.7 1.0
C R:GLY228 4.4 26.4 1.0
O R:HOH592 4.4 24.7 1.0
CG R:LYS213 4.4 42.5 1.0
CA R:GLY228 4.5 25.6 1.0
OE2 Q:GLU297 4.5 25.1 1.0
O R:HOH653 4.6 37.4 1.0
N R:LYS213 4.6 36.7 1.0
O R:THR209 4.6 36.8 1.0
O R:HOH641 4.6 30.3 1.0
CA R:LYS213 4.7 38.7 1.0

Reference:

L.Zhang, M.R.Liu, L.Y.Bao, Y.C.Yao, I.K.Bostrom, Y.D.Wang, A.Q.Chen, J.X.Li, S.H.Gu, C.N.Ji. Crystal Structure of TYPE1 Glyceraldehyde-3-Phosphate Dehydrogenase From Escherichia Coli Provides New Insight Into Bpg Generation and Catalytic Mechanism To Be Published.
Page generated: Mon Jul 29 19:30:48 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy