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Chlorine in PDB 7c7c: Crystal Structure of Human TRAP1 with SJT104

Protein crystallography data

The structure of Crystal Structure of Human TRAP1 with SJT104, PDB code: 7c7c was solved by D.Kim, S.Yang, N.G.Yoon, E.Park, S.Y.Kim, B.H.Kang, C.Lee, S.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.98 / 3.00
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 69.543, 69.543, 251.327, 90, 90, 90
R / Rfree (%) 23.2 / 30.3

Other elements in 7c7c:

The structure of Crystal Structure of Human TRAP1 with SJT104 also contains other interesting chemical elements:

Fluorine (F) 1 atom
Bromine (Br) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human TRAP1 with SJT104 (pdb code 7c7c). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human TRAP1 with SJT104, PDB code: 7c7c:

Chlorine binding site 1 out of 1 in 7c7c

Go back to Chlorine Binding Sites List in 7c7c
Chlorine binding site 1 out of 1 in the Crystal Structure of Human TRAP1 with SJT104


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human TRAP1 with SJT104 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:149.3
occ:1.00
CL A:FK0601 0.0 149.3 1.0
C01 A:FK0601 1.8 99.3 1.0
N02 A:FK0601 2.7 74.2 1.0
C06 A:FK0601 2.8 89.1 1.0
O A:ILE161 2.9 88.6 1.0
CB A:ALA123 3.2 58.5 1.0
N09 A:FK0601 3.3 93.5 1.0
C03 A:FK0601 4.0 85.7 1.0
C A:ILE161 4.1 82.3 1.0
C05 A:FK0601 4.1 89.4 1.0
CG A:MET163 4.1 58.2 1.0
OG1 A:THR251 4.2 60.4 1.0
C A:GLY162 4.3 90.9 1.0
CA A:GLY162 4.4 68.6 1.0
CA A:ALA123 4.4 60.2 1.0
O A:GLY162 4.5 95.7 1.0
N04 A:FK0601 4.5 89.9 1.0
N A:MET163 4.6 90.1 1.0
C08 A:FK0601 4.6 97.2 1.0
N A:GLY162 4.7 73.2 1.0
O A:GLY160 4.7 100.8 1.0
N07 A:FK0601 5.0 84.3 1.0

Reference:

S.Yang, N.G.Yoon, D.Kim, S.Y.Kim, C.Lee, B.H.Kang, S.Kang. Design and Synthesis of TRAP1 Selective Inhibitors: Interacting with ASN171 Residue in TRAP1 to in-Crease Paralog Selectivity To Be Published.
Page generated: Mon Jul 29 19:39:02 2024

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