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Chlorine in PDB 7c7p: Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Telaprevir

Enzymatic activity of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Telaprevir

All present enzymatic activity of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Telaprevir:
3.4.22.69;

Protein crystallography data

The structure of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Telaprevir, PDB code: 7c7p was solved by R.Zeng, J.X.Qiao, Y.F.Wang, Y.S.Li, R.Yao, S.Y.Yang, J.Lei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.81 / 1.74
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.907, 98.731, 103.487, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Telaprevir (pdb code 7c7p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Telaprevir, PDB code: 7c7p:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7c7p

Go back to Chlorine Binding Sites List in 7c7p
Chlorine binding site 1 out of 2 in the Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Telaprevir


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Telaprevir within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:21.8
occ:1.00
O A:HOH738 3.1 32.4 1.0
N A:GLN107 3.3 20.1 1.0
NE2 A:GLN110 3.3 21.4 1.0
CA A:ILE106 3.7 20.0 1.0
CG A:GLN110 3.8 19.7 1.0
CB A:ILE106 3.8 19.6 1.0
CB A:GLN110 3.9 19.1 1.0
CB A:GLN107 3.9 25.1 1.0
C A:ILE106 4.0 19.6 1.0
CD A:GLN110 4.1 20.4 1.0
CA A:GLN107 4.2 21.8 1.0
CG2 A:ILE106 4.2 19.8 1.0
CG A:GLN107 4.2 27.2 1.0
O A:GLN107 4.5 20.8 1.0
O A:HOH543 4.6 48.3 1.0
C A:GLN107 4.8 22.4 1.0
O A:ARG105 4.9 23.9 1.0
N A:ILE106 5.0 19.7 1.0

Chlorine binding site 2 out of 2 in 7c7p

Go back to Chlorine Binding Sites List in 7c7p
Chlorine binding site 2 out of 2 in the Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Telaprevir


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Telaprevir within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:41.8
occ:1.00
N B:LYS5 3.2 23.5 1.0
NH2 B:ARG4 3.4 33.0 1.0
CD B:ARG4 3.4 29.1 1.0
O B:HOH556 3.7 32.4 1.0
CB B:LYS5 3.8 30.6 1.0
CD A:LYS5 4.0 46.8 1.0
CA B:ARG4 4.0 21.1 1.0
CA B:LYS5 4.0 23.9 1.0
C B:ARG4 4.1 19.6 1.0
CB B:ARG4 4.2 20.8 1.0
CZ B:ARG4 4.3 30.8 1.0
NE B:ARG4 4.3 30.0 1.0
O B:LYS5 4.4 27.6 1.0
CG A:LYS5 4.5 43.3 1.0
CG B:ARG4 4.5 25.4 1.0
O B:HOH610 4.6 45.4 1.0
C B:LYS5 4.7 26.2 1.0
CB A:LYS5 4.7 37.2 1.0
O A:GLN127 4.8 25.0 1.0

Reference:

J.X.Qiao, R.Zeng, Y.F.Wang, Y.S.Li, R.Yao, Y.L.Zhou, P.Chen, J.Lei, S.Y.Yang. Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Telaprevir To Be Published.
Page generated: Mon Jul 29 19:39:02 2024

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