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Chlorine in PDB 7cbs: Crystal Structure of Spab Basal Pilin From Lactobacillus Rhamnosus Gg

Protein crystallography data

The structure of Crystal Structure of Spab Basal Pilin From Lactobacillus Rhamnosus Gg, PDB code: 7cbs was solved by A.K.Megta, S.Pratap, A.Kant, V.Krishnan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.59 / 2.39
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 51.526, 51.526, 408.208, 90, 90, 120
R / Rfree (%) 19 / 22.8

Other elements in 7cbs:

The structure of Crystal Structure of Spab Basal Pilin From Lactobacillus Rhamnosus Gg also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Spab Basal Pilin From Lactobacillus Rhamnosus Gg (pdb code 7cbs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Spab Basal Pilin From Lactobacillus Rhamnosus Gg, PDB code: 7cbs:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7cbs

Go back to Chlorine Binding Sites List in 7cbs
Chlorine binding site 1 out of 3 in the Crystal Structure of Spab Basal Pilin From Lactobacillus Rhamnosus Gg


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Spab Basal Pilin From Lactobacillus Rhamnosus Gg within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:60.3
occ:1.00
OD1 B:ASN173 3.4 76.2 1.0
ND2 B:ASN173 3.7 73.8 1.0
CG B:ASN173 4.0 73.4 1.0
CB B:HIS171 4.2 68.2 1.0
ND1 B:HIS171 4.4 70.0 1.0
O B:HOH311 4.4 40.8 1.0
O B:HIS171 4.5 68.3 1.0
CG B:HIS171 4.8 66.7 1.0

Chlorine binding site 2 out of 3 in 7cbs

Go back to Chlorine Binding Sites List in 7cbs
Chlorine binding site 2 out of 3 in the Crystal Structure of Spab Basal Pilin From Lactobacillus Rhamnosus Gg


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Spab Basal Pilin From Lactobacillus Rhamnosus Gg within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl202

b:48.2
occ:1.00
ND1 C:HIS171 3.6 76.1 1.0
CB C:HIS171 3.7 70.6 1.0
CG C:HIS171 4.0 71.3 1.0
O C:HIS171 4.1 70.0 1.0
CE1 C:HIS171 4.5 74.8 1.0
CA C:HIS171 4.6 68.0 1.0
C C:HIS171 4.8 67.8 1.0

Chlorine binding site 3 out of 3 in 7cbs

Go back to Chlorine Binding Sites List in 7cbs
Chlorine binding site 3 out of 3 in the Crystal Structure of Spab Basal Pilin From Lactobacillus Rhamnosus Gg


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Spab Basal Pilin From Lactobacillus Rhamnosus Gg within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl201

b:55.5
occ:1.00
O D:HIS171 4.6 90.3 1.0
ND1 D:HIS171 4.7 87.6 1.0
CB D:HIS171 4.8 84.0 1.0

Reference:

A.K.Megta, S.Pratap, A.Kant, A.Palva, I.Von Ossowski, V.Krishnan. Crystal Structure of the Atypically Adhesive Spab Basal Pilus Subunit: Mechanistic Insights About Its Incorporation in Lactobacillar Spacba Pili. Curr Res Struct Biol V. 2 229 2020.
ISSN: ESSN 2665-928X
DOI: 10.1016/J.CRSTBI.2020.11.001
Page generated: Mon Jul 29 19:39:51 2024

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