Chlorine in PDB 7cjz: Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography
Enzymatic activity of Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography
All present enzymatic activity of Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography:
3.2.1.17;
Protein crystallography data
The structure of Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography, PDB code: 7cjz
was solved by
K.H.Nam,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
56.18 /
1.75
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.450,
79.450,
38.470,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.5 /
18.7
|
Other elements in 7cjz:
The structure of Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography
(pdb code 7cjz). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography, PDB code: 7cjz:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 7cjz
Go back to
Chlorine Binding Sites List in 7cjz
Chlorine binding site 1 out
of 2 in the Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:36.7
occ:1.00
|
HD22
|
A:ASN131
|
2.5
|
39.5
|
1.0
|
HB2
|
A:ASN131
|
2.9
|
31.6
|
1.0
|
HA
|
A:ALA128
|
3.1
|
29.8
|
1.0
|
HG12
|
A:VAL127
|
3.2
|
37.0
|
0.6
|
ND2
|
A:ASN131
|
3.3
|
32.9
|
1.0
|
HG22
|
A:VAL127
|
3.6
|
36.5
|
0.4
|
CB
|
A:ASN131
|
3.6
|
26.3
|
1.0
|
HB3
|
A:ASN131
|
3.6
|
31.6
|
1.0
|
HD2
|
A:ARG132
|
3.7
|
40.2
|
1.0
|
HG3
|
A:ARG132
|
3.8
|
37.4
|
1.0
|
HD21
|
A:ASN131
|
3.9
|
39.5
|
1.0
|
CA
|
A:ALA128
|
4.0
|
24.8
|
1.0
|
CG
|
A:ASN131
|
4.0
|
29.8
|
1.0
|
O
|
A:VAL127
|
4.0
|
28.8
|
0.6
|
O
|
A:VAL127
|
4.1
|
28.9
|
0.4
|
CG1
|
A:VAL127
|
4.1
|
30.8
|
0.6
|
HB1
|
A:ALA128
|
4.2
|
38.7
|
1.0
|
C
|
A:VAL127
|
4.3
|
26.0
|
0.6
|
N
|
A:ALA128
|
4.3
|
26.3
|
1.0
|
C
|
A:VAL127
|
4.3
|
26.1
|
0.4
|
CD
|
A:ARG132
|
4.4
|
33.4
|
1.0
|
HG13
|
A:VAL127
|
4.5
|
37.0
|
0.6
|
HG11
|
A:VAL127
|
4.5
|
37.0
|
0.6
|
CG2
|
A:VAL127
|
4.5
|
30.4
|
0.4
|
HD3
|
A:ARG132
|
4.5
|
40.2
|
1.0
|
CG
|
A:ARG132
|
4.5
|
31.2
|
1.0
|
HB
|
A:VAL127
|
4.5
|
40.4
|
0.4
|
CB
|
A:ALA128
|
4.5
|
32.2
|
1.0
|
HB3
|
A:ALA128
|
4.7
|
38.7
|
1.0
|
H
|
A:ASN131
|
4.7
|
34.9
|
1.0
|
HG2
|
A:ARG132
|
4.9
|
37.4
|
1.0
|
H
|
A:ALA128
|
4.9
|
31.6
|
1.0
|
HB
|
A:VAL127
|
4.9
|
40.5
|
0.6
|
CA
|
A:ASN131
|
4.9
|
27.5
|
1.0
|
HH11
|
A:ARG132
|
5.0
|
39.1
|
1.0
|
HG21
|
A:VAL127
|
5.0
|
36.5
|
0.4
|
CB
|
A:VAL127
|
5.0
|
33.6
|
0.4
|
|
Chlorine binding site 2 out
of 2 in 7cjz
Go back to
Chlorine Binding Sites List in 7cjz
Chlorine binding site 2 out
of 2 in the Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Room Temperature Structure of Lysozyme Delivered in Lard By Serial Millisecond Crystallography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:44.9
occ:1.00
|
H
|
A:GLY44
|
2.2
|
32.3
|
1.0
|
HG
|
A:SER42
|
2.7
|
40.4
|
1.0
|
HA
|
A:GLN139
|
2.7
|
45.9
|
1.0
|
HB2
|
A:SER42
|
2.9
|
39.8
|
1.0
|
HB3
|
A:GLN139
|
2.9
|
60.7
|
1.0
|
HA3
|
A:GLY44
|
3.0
|
33.5
|
1.0
|
OG
|
A:SER42
|
3.0
|
33.6
|
1.0
|
N
|
A:GLY44
|
3.0
|
26.8
|
1.0
|
HB2
|
A:GLN139
|
3.3
|
60.7
|
1.0
|
CB
|
A:GLN139
|
3.3
|
50.6
|
1.0
|
CA
|
A:GLN139
|
3.3
|
38.2
|
1.0
|
HD11
|
A:ILE142
|
3.4
|
62.3
|
1.0
|
CB
|
A:SER42
|
3.5
|
33.2
|
1.0
|
CA
|
A:GLY44
|
3.5
|
27.9
|
1.0
|
HG22
|
A:VAL138
|
3.7
|
45.0
|
1.0
|
HD13
|
A:ILE142
|
3.7
|
62.3
|
1.0
|
HG12
|
A:ILE142
|
3.7
|
40.6
|
1.0
|
N
|
A:GLN139
|
3.8
|
37.6
|
1.0
|
H
|
A:LEU43
|
3.9
|
33.9
|
1.0
|
CD1
|
A:ILE142
|
3.9
|
51.9
|
1.0
|
N
|
A:LEU43
|
4.0
|
28.2
|
1.0
|
HB3
|
A:SER42
|
4.1
|
39.8
|
1.0
|
HA2
|
A:GLY44
|
4.1
|
33.5
|
1.0
|
H
|
A:GLN139
|
4.1
|
45.1
|
1.0
|
C
|
A:LEU43
|
4.2
|
27.6
|
1.0
|
C
|
A:SER42
|
4.2
|
33.4
|
1.0
|
H
|
A:ASN45
|
4.2
|
29.7
|
1.0
|
HB3
|
A:LEU43
|
4.2
|
39.5
|
1.0
|
CG1
|
A:ILE142
|
4.3
|
33.8
|
1.0
|
C
|
A:VAL138
|
4.3
|
35.4
|
1.0
|
HG21
|
A:VAL138
|
4.4
|
45.0
|
1.0
|
CG2
|
A:VAL138
|
4.5
|
37.5
|
1.0
|
CA
|
A:SER42
|
4.5
|
31.1
|
1.0
|
O
|
A:VAL138
|
4.5
|
32.4
|
1.0
|
CA
|
A:LEU43
|
4.5
|
28.0
|
1.0
|
O
|
A:SER42
|
4.6
|
29.4
|
1.0
|
C
|
A:GLY44
|
4.6
|
25.9
|
1.0
|
N
|
A:ASN45
|
4.7
|
24.7
|
1.0
|
C
|
A:GLN139
|
4.7
|
38.4
|
1.0
|
HD12
|
A:ILE142
|
4.8
|
62.3
|
1.0
|
CG
|
A:GLN139
|
4.8
|
58.7
|
1.0
|
HB
|
A:VAL138
|
4.8
|
39.5
|
1.0
|
HG13
|
A:ILE142
|
4.9
|
40.6
|
1.0
|
CB
|
A:LEU43
|
4.9
|
32.8
|
1.0
|
HG23
|
A:ILE142
|
4.9
|
42.8
|
1.0
|
HA
|
A:SER42
|
5.0
|
37.3
|
1.0
|
HD21
|
A:ASN45
|
5.0
|
40.1
|
1.0
|
|
Reference:
K.H.Nam,
K.H.Nam.
N/A N/A.
ISSN: ESSN 1422-0067
PubMed: 32825186
DOI: 10.3390/IJMS21175977
Page generated: Sun Dec 13 10:28:03 2020
|