Chlorine in PDB 7cno: Phomopsin A in Complex with Tubulin

Protein crystallography data

The structure of Phomopsin A in Complex with Tubulin, PDB code: 7cno was solved by C.Y.Wu, Y.X.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.70 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 105.276, 155.217, 184.201, 90, 90, 90
R / Rfree (%) 18.7 / 23.9

Other elements in 7cno:

The structure of Phomopsin A in Complex with Tubulin also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Calcium (Ca) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Phomopsin A in Complex with Tubulin (pdb code 7cno). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Phomopsin A in Complex with Tubulin, PDB code: 7cno:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7cno

Go back to Chlorine Binding Sites List in 7cno
Chlorine binding site 1 out of 3 in the Phomopsin A in Complex with Tubulin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Phomopsin A in Complex with Tubulin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:60.9
occ:1.00
N A:LYS163 3.3 73.1 1.0
N A:GLY162 3.6 54.4 1.0
CB A:LYS163 3.6 77.9 1.0
C A:TYR161 3.7 51.1 1.0
CE A:LYS164 3.7 85.0 1.0
CA A:TYR161 3.8 47.7 1.0
CA A:LYS163 3.9 81.3 1.0
CG A:LYS163 4.0 75.6 1.0
C A:GLY162 4.3 67.1 1.0
N A:LYS164 4.3 63.8 1.0
O A:TYR161 4.3 49.0 1.0
CA A:GLY162 4.4 53.8 1.0
CG A:LYS164 4.5 65.4 1.0
C A:LYS163 4.5 75.7 1.0
CB A:TYR161 4.7 46.0 1.0
NZ A:LYS164 4.7 88.0 1.0
CD A:LYS164 4.7 76.5 1.0
N A:TYR161 4.9 51.1 1.0

Chlorine binding site 2 out of 3 in 7cno

Go back to Chlorine Binding Sites List in 7cno
Chlorine binding site 2 out of 3 in the Phomopsin A in Complex with Tubulin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Phomopsin A in Complex with Tubulin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl507

b:34.8
occ:1.00
CL1 B:HOS507 0.0 34.8 1.0
C11 B:HOS507 1.8 37.9 1.0
C12 B:HOS507 2.7 31.4 1.0
C10 B:HOS507 2.8 33.4 1.0
O5 B:HOS507 2.9 32.5 1.0
ND2 C:ASN329 3.4 35.0 1.0
O B:HOH623 3.4 32.9 1.0
O B:THR220 3.5 35.3 1.0
CD B:PRO222 3.8 29.2 1.0
OH B:TYR210 3.9 52.7 1.0
CG C:ASN329 3.9 33.3 1.0
CE1 B:TYR210 4.0 38.0 1.0
C1 B:HOS507 4.0 27.2 1.0
CA B:THR221 4.1 36.8 1.0
O B:HOH726 4.1 48.1 1.0
C9 B:HOS507 4.1 28.1 1.0
CZ B:TYR210 4.4 37.9 1.0
OD1 C:ASN329 4.5 31.3 1.0
C13 B:HOS507 4.5 34.3 1.0
C B:THR220 4.5 36.4 1.0
CB C:ASN329 4.6 30.0 1.0
O B:HOH712 4.6 49.7 1.0
N B:PRO222 4.6 29.4 1.0
CG2 B:THR221 4.7 30.7 1.0
C B:THR221 4.8 33.0 1.0
N B:THR221 4.8 32.8 1.0
CB B:THR221 4.8 37.1 1.0
OG1 B:THR221 4.8 41.5 1.0
O2 B:HOS507 4.9 29.5 1.0

Chlorine binding site 3 out of 3 in 7cno

Go back to Chlorine Binding Sites List in 7cno
Chlorine binding site 3 out of 3 in the Phomopsin A in Complex with Tubulin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Phomopsin A in Complex with Tubulin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl502

b:125.5
occ:1.00
CL1 D:HOS502 0.0 125.5 1.0
C11 D:HOS502 1.8 99.8 1.0
C10 D:HOS502 2.7 74.0 1.0
C12 D:HOS502 2.8 83.8 1.0
O5 D:HOS502 3.1 76.4 1.0
O D:THR220 3.7 87.3 1.0
CD D:PRO222 3.8 94.9 1.0
O D:HOH611 4.0 44.7 1.0
C9 D:HOS502 4.0 71.7 1.0
OH D:TYR210 4.0 106.4 1.0
C1 D:HOS502 4.1 71.3 1.0
O3 D:HOS502 4.3 78.0 1.0
C13 D:HOS502 4.5 69.1 1.0
CG D:PRO222 4.6 86.3 1.0
CE1 D:TYR210 4.6 100.4 1.0
O2 D:HOS502 4.6 72.0 1.0
CZ D:TYR210 4.7 103.0 1.0
C D:THR220 5.0 83.9 1.0

Reference:

C.Y.Wu, Y.X.Wang. Phomopsin A in Complex with Tubulin To Be Published.
Page generated: Sat Aug 21 13:15:25 2021

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