Chlorine in PDB 7cno: Phomopsin A in Complex with Tubulin
Protein crystallography data
The structure of Phomopsin A in Complex with Tubulin, PDB code: 7cno
was solved by
C.Y.Wu,
Y.X.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.70 /
2.50
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
105.276,
155.217,
184.201,
90,
90,
90
|
R / Rfree (%)
|
18.7 /
23.9
|
Other elements in 7cno:
The structure of Phomopsin A in Complex with Tubulin also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Phomopsin A in Complex with Tubulin
(pdb code 7cno). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Phomopsin A in Complex with Tubulin, PDB code: 7cno:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 7cno
Go back to
Chlorine Binding Sites List in 7cno
Chlorine binding site 1 out
of 3 in the Phomopsin A in Complex with Tubulin
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Phomopsin A in Complex with Tubulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl504
b:60.9
occ:1.00
|
N
|
A:LYS163
|
3.3
|
73.1
|
1.0
|
N
|
A:GLY162
|
3.6
|
54.4
|
1.0
|
CB
|
A:LYS163
|
3.6
|
77.9
|
1.0
|
C
|
A:TYR161
|
3.7
|
51.1
|
1.0
|
CE
|
A:LYS164
|
3.7
|
85.0
|
1.0
|
CA
|
A:TYR161
|
3.8
|
47.7
|
1.0
|
CA
|
A:LYS163
|
3.9
|
81.3
|
1.0
|
CG
|
A:LYS163
|
4.0
|
75.6
|
1.0
|
C
|
A:GLY162
|
4.3
|
67.1
|
1.0
|
N
|
A:LYS164
|
4.3
|
63.8
|
1.0
|
O
|
A:TYR161
|
4.3
|
49.0
|
1.0
|
CA
|
A:GLY162
|
4.4
|
53.8
|
1.0
|
CG
|
A:LYS164
|
4.5
|
65.4
|
1.0
|
C
|
A:LYS163
|
4.5
|
75.7
|
1.0
|
CB
|
A:TYR161
|
4.7
|
46.0
|
1.0
|
NZ
|
A:LYS164
|
4.7
|
88.0
|
1.0
|
CD
|
A:LYS164
|
4.7
|
76.5
|
1.0
|
N
|
A:TYR161
|
4.9
|
51.1
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 7cno
Go back to
Chlorine Binding Sites List in 7cno
Chlorine binding site 2 out
of 3 in the Phomopsin A in Complex with Tubulin
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Phomopsin A in Complex with Tubulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl507
b:34.8
occ:1.00
|
CL1
|
B:HOS507
|
0.0
|
34.8
|
1.0
|
C11
|
B:HOS507
|
1.8
|
37.9
|
1.0
|
C12
|
B:HOS507
|
2.7
|
31.4
|
1.0
|
C10
|
B:HOS507
|
2.8
|
33.4
|
1.0
|
O5
|
B:HOS507
|
2.9
|
32.5
|
1.0
|
ND2
|
C:ASN329
|
3.4
|
35.0
|
1.0
|
O
|
B:HOH623
|
3.4
|
32.9
|
1.0
|
O
|
B:THR220
|
3.5
|
35.3
|
1.0
|
CD
|
B:PRO222
|
3.8
|
29.2
|
1.0
|
OH
|
B:TYR210
|
3.9
|
52.7
|
1.0
|
CG
|
C:ASN329
|
3.9
|
33.3
|
1.0
|
CE1
|
B:TYR210
|
4.0
|
38.0
|
1.0
|
C1
|
B:HOS507
|
4.0
|
27.2
|
1.0
|
CA
|
B:THR221
|
4.1
|
36.8
|
1.0
|
O
|
B:HOH726
|
4.1
|
48.1
|
1.0
|
C9
|
B:HOS507
|
4.1
|
28.1
|
1.0
|
CZ
|
B:TYR210
|
4.4
|
37.9
|
1.0
|
OD1
|
C:ASN329
|
4.5
|
31.3
|
1.0
|
C13
|
B:HOS507
|
4.5
|
34.3
|
1.0
|
C
|
B:THR220
|
4.5
|
36.4
|
1.0
|
CB
|
C:ASN329
|
4.6
|
30.0
|
1.0
|
O
|
B:HOH712
|
4.6
|
49.7
|
1.0
|
N
|
B:PRO222
|
4.6
|
29.4
|
1.0
|
CG2
|
B:THR221
|
4.7
|
30.7
|
1.0
|
C
|
B:THR221
|
4.8
|
33.0
|
1.0
|
N
|
B:THR221
|
4.8
|
32.8
|
1.0
|
CB
|
B:THR221
|
4.8
|
37.1
|
1.0
|
OG1
|
B:THR221
|
4.8
|
41.5
|
1.0
|
O2
|
B:HOS507
|
4.9
|
29.5
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 7cno
Go back to
Chlorine Binding Sites List in 7cno
Chlorine binding site 3 out
of 3 in the Phomopsin A in Complex with Tubulin
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Phomopsin A in Complex with Tubulin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl502
b:125.5
occ:1.00
|
CL1
|
D:HOS502
|
0.0
|
125.5
|
1.0
|
C11
|
D:HOS502
|
1.8
|
99.8
|
1.0
|
C10
|
D:HOS502
|
2.7
|
74.0
|
1.0
|
C12
|
D:HOS502
|
2.8
|
83.8
|
1.0
|
O5
|
D:HOS502
|
3.1
|
76.4
|
1.0
|
O
|
D:THR220
|
3.7
|
87.3
|
1.0
|
CD
|
D:PRO222
|
3.8
|
94.9
|
1.0
|
O
|
D:HOH611
|
4.0
|
44.7
|
1.0
|
C9
|
D:HOS502
|
4.0
|
71.7
|
1.0
|
OH
|
D:TYR210
|
4.0
|
106.4
|
1.0
|
C1
|
D:HOS502
|
4.1
|
71.3
|
1.0
|
O3
|
D:HOS502
|
4.3
|
78.0
|
1.0
|
C13
|
D:HOS502
|
4.5
|
69.1
|
1.0
|
CG
|
D:PRO222
|
4.6
|
86.3
|
1.0
|
CE1
|
D:TYR210
|
4.6
|
100.4
|
1.0
|
O2
|
D:HOS502
|
4.6
|
72.0
|
1.0
|
CZ
|
D:TYR210
|
4.7
|
103.0
|
1.0
|
C
|
D:THR220
|
5.0
|
83.9
|
1.0
|
|
Reference:
C.Y.Wu,
Y.X.Wang.
Phomopsin A in Complex with Tubulin To Be Published.
Page generated: Mon Jul 29 19:49:39 2024
|