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Chlorine in PDB 7co6: Binary Complex of Dna Polymerase Mu with 1-Nt Gapped Dna (Templating Thymine)

Enzymatic activity of Binary Complex of Dna Polymerase Mu with 1-Nt Gapped Dna (Templating Thymine)

All present enzymatic activity of Binary Complex of Dna Polymerase Mu with 1-Nt Gapped Dna (Templating Thymine):
2.7.7.7;

Protein crystallography data

The structure of Binary Complex of Dna Polymerase Mu with 1-Nt Gapped Dna (Templating Thymine), PDB code: 7co6 was solved by M.Guo, Y.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.45 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.18, 62.59, 117.79, 90, 90, 90
R / Rfree (%) 18 / 21.4

Other elements in 7co6:

The structure of Binary Complex of Dna Polymerase Mu with 1-Nt Gapped Dna (Templating Thymine) also contains other interesting chemical elements:

Potassium (K) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Binary Complex of Dna Polymerase Mu with 1-Nt Gapped Dna (Templating Thymine) (pdb code 7co6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Binary Complex of Dna Polymerase Mu with 1-Nt Gapped Dna (Templating Thymine), PDB code: 7co6:

Chlorine binding site 1 out of 1 in 7co6

Go back to Chlorine Binding Sites List in 7co6
Chlorine binding site 1 out of 1 in the Binary Complex of Dna Polymerase Mu with 1-Nt Gapped Dna (Templating Thymine)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Binary Complex of Dna Polymerase Mu with 1-Nt Gapped Dna (Templating Thymine) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:39.0
occ:1.00
 OG A:SER458 3.0 31.9 1.0
O3 A:GOL501 3.1 41.2 1.0
N A:SER458 3.3 24.7 1.0
C3 A:GOL501 3.3 45.4 1.0
C1' T:DA7 3.3 30.0 1.0
NH2 A:ARG387 3.4 31.4 1.0
O4' T:DA7 3.5 32.1 1.0
CB A:SER458 3.6 32.7 1.0
CB A:ASN457 3.6 24.6 1.0
C2' T:DA7 3.7 30.3 1.0
C4' T:DA7 3.9 35.0 1.0
CA A:SER458 4.0 25.0 1.0
NH2 A:ARG445 4.2 24.2 1.0
CG A:ASN457 4.2 32.0 1.0
NH1 A:ARG445 4.3 30.0 1.0
C A:ASN457 4.3 24.8 1.0
CA A:ASN457 4.3 26.4 1.0
C3' T:DA7 4.4 32.4 1.0
C2 A:GOL501 4.5 48.5 1.0
CZ A:ARG387 4.6 29.0 1.0
N9 T:DA7 4.6 32.3 1.0
NE2 A:HIS459 4.6 43.5 1.0
CZ A:ARG445 4.6 28.4 1.0
O3' T:DA7 4.7 38.7 1.0
ND2 A:ASN457 4.7 31.3 1.0
C A:SER458 4.7 28.1 1.0
O2 T:DT6 4.7 28.5 1.0
N A:HIS459 4.7 28.1 1.0
CD2 A:HIS459 4.8 39.8 1.0
O2 A:GOL501 4.8 43.8 1.0
OD1 A:ASN457 4.8 27.1 1.0
NH1 A:ARG387 4.9 25.4 1.0
CE1 A:HIS459 4.9 42.8 1.0

Reference:

M.Guo, Y.Wang, Y.Tang, Z.Chen, J.Hou, J.Dai, Y.Wang, L.Wang, H.Xu, B.Tian, Y.Hua, Y.Zhao. Mechanism of Genome Instability Mediated By Human Dna Polymerase Mu Misincorporation. Nat Commun V. 12 3759 2021.
ISSN: ESSN 2041-1723
PubMed: 34145298
DOI: 10.1038/S41467-021-24096-7
Page generated: Mon Jul 29 19:49:41 2024

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