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Chlorine in PDB 7cow: 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0

Protein crystallography data

The structure of 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0, PDB code: 7cow was solved by Z.Adhireksan, D.Sharma, P.L.Lee, C.A.Davey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.35 / 2.86
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 66.215, 105.053, 171.126, 86.59, 88.95, 88.25
R / Rfree (%) 22.5 / 29.7

Other elements in 7cow:

The structure of 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0 also contains other interesting chemical elements:

Calcium (Ca) 3 atoms
Potassium (K) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0 (pdb code 7cow). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0, PDB code: 7cow:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7cow

Go back to Chlorine Binding Sites List in 7cow
Chlorine binding site 1 out of 4 in the 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl201

b:72.3
occ:1.00
 N C:GLY46 2.9 63.8 1.0
CA C:GLY44 3.0 76.8 1.0
N C:ALA45 3.1 78.3 1.0
C C:GLY44 3.3 77.5 1.0
OG D:SER91 3.3 76.7 1.0
CA C:GLY46 3.5 64.5 1.0
N C:ALA47 3.6 57.9 1.0
N D:SER91 3.7 69.3 1.0
OP1 I:DT301 3.7 143.1 1.0
CA D:THR90 3.9 66.1 1.0
C C:ALA45 3.9 73.6 1.0
CB D:THR90 4.0 67.8 1.0
C C:GLY46 4.0 66.0 1.0
CA C:ALA45 4.1 81.7 1.0
O C:GLY44 4.2 92.6 1.0
C D:THR90 4.3 75.0 1.0
N C:GLY44 4.3 76.7 1.0
CB D:SER91 4.4 73.1 1.0
CB C:ALA47 4.5 54.8 1.0
CA C:ALA47 4.6 56.6 1.0
CA D:SER91 4.7 69.6 1.0
CG2 D:THR90 4.8 71.5 1.0
CB C:ALA45 4.9 83.4 1.0
OG1 D:THR90 5.0 65.4 1.0
O D:ILE89 5.0 67.5 1.0
O C:ALA45 5.0 67.7 1.0

Chlorine binding site 2 out of 4 in 7cow

Go back to Chlorine Binding Sites List in 7cow
Chlorine binding site 2 out of 4 in the 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl201

b:66.2
occ:1.00
 N G:GLY46 3.2 81.9 1.0
N H:SER91 3.3 68.8 1.0
CA G:GLY44 3.4 82.6 1.0
CA G:GLY46 3.4 83.1 1.0
N G:ALA47 3.6 68.2 1.0
CA H:THR90 3.6 66.0 1.0
C G:GLY44 3.6 86.7 1.0
N G:ALA45 3.7 94.8 1.0
CB H:THR90 3.8 71.8 1.0
C G:GLY46 3.9 80.9 1.0
C H:THR90 3.9 73.2 1.0
OG H:SER91 4.0 78.3 1.0
CB H:SER91 4.1 69.5 1.0
C G:ALA45 4.3 89.8 1.0
CA H:SER91 4.3 63.0 1.0
OP1 J:DG125 4.3 123.2 1.0
O G:GLY44 4.4 87.6 1.0
N G:GLY44 4.5 81.8 1.0
CG2 H:THR90 4.6 72.2 1.0
CA G:ALA47 4.6 63.9 1.0
CA G:ALA45 4.7 100.4 1.0
CB G:ALA47 4.7 66.2 1.0
O H:ILE89 4.8 68.8 1.0
N H:THR90 4.9 58.8 1.0

Chlorine binding site 3 out of 4 in 7cow

Go back to Chlorine Binding Sites List in 7cow
Chlorine binding site 3 out of 4 in the 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Cl201

b:83.5
occ:1.00
 N M:GLY46 2.9 72.1 1.0
OG N:SER91 3.2 91.1 1.0
CA M:GLY46 3.2 76.2 1.0
N M:ALA47 3.3 74.4 1.0
N M:ALA45 3.3 89.5 1.0
N N:SER91 3.4 82.9 1.0
C M:GLY44 3.5 90.4 1.0
CA M:GLY44 3.6 84.2 1.0
C M:GLY46 3.7 77.2 1.0
C M:ALA45 3.9 81.4 1.0
CA N:THR90 4.0 82.2 1.0
CB N:SER91 4.0 87.9 1.0
OP1 J:DG301 4.2 107.6 1.0
C N:THR90 4.2 86.8 1.0
CA M:ALA45 4.3 90.2 1.0
CB N:THR90 4.3 83.1 1.0
O M:GLY44 4.3 107.7 1.0
CA N:SER91 4.3 80.3 1.0
CA M:ALA47 4.4 67.6 1.0
CB M:ALA47 4.5 57.6 1.0
N M:GLY44 4.7 77.0 1.0
O M:GLY46 4.9 83.9 1.0
CG2 N:THR90 4.9 85.3 1.0

Chlorine binding site 4 out of 4 in 7cow

Go back to Chlorine Binding Sites List in 7cow
Chlorine binding site 4 out of 4 in the 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 353 Bp Di-Nucleosome Harboring Cohesive Dna Termini with Linker Histone H1.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl201

b:69.9
occ:1.00
 N Q:GLY46 2.9 77.0 1.0
CA Q:GLY46 3.2 76.3 1.0
CA Q:GLY44 3.3 70.5 1.0
C Q:GLY44 3.4 68.5 1.0
N Q:ALA45 3.4 74.1 1.0
N Q:ALA47 3.4 73.2 1.0
N R:SER91 3.5 65.6 1.0
C Q:GLY46 3.7 77.5 1.0
OG R:SER91 3.7 82.5 1.0
CA R:THR90 3.8 66.2 1.0
CB R:THR90 4.0 64.7 1.0
C Q:ALA45 4.0 78.8 1.0
O Q:GLY44 4.1 64.8 1.0
C R:THR90 4.1 71.3 1.0
CB R:SER91 4.2 81.2 1.0
OP1 I:DT125 4.3 99.9 1.0
CA Q:ALA45 4.3 80.3 1.0
CA R:SER91 4.5 72.5 1.0
N Q:GLY44 4.5 73.3 1.0
CA Q:ALA47 4.6 66.8 1.0
CG2 R:THR90 4.7 59.6 1.0
CB Q:ALA47 4.8 62.1 1.0
O Q:GLY46 4.8 79.6 1.0
O R:ILE89 5.0 62.0 1.0

Reference:

Z.Adhireksan, D.Sharma, C.A.Davey. 355 Bp Di-Nucleosome To Be Published.
Page generated: Mon Jul 29 19:50:10 2024

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