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Chlorine in PDB 7cqo: Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min

Enzymatic activity of Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min

All present enzymatic activity of Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min:
3.2.1.17;

Protein crystallography data

The structure of Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min, PDB code: 7cqo was solved by Z.P.Luo, D.F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.66 / 1.71
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.733, 78.733, 37.241, 90, 90, 90
R / Rfree (%) 16.9 / 19.9

Other elements in 7cqo:

The structure of Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min (pdb code 7cqo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min, PDB code: 7cqo:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7cqo

Go back to Chlorine Binding Sites List in 7cqo
Chlorine binding site 1 out of 5 in the Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:23.4
occ:1.00
 OH A:TYR41 3.0 14.4 1.0
O A:HOH357 3.4 24.2 1.0
CZ A:TYR41 3.7 14.9 1.0
CE2 A:TYR41 3.7 14.3 1.0
CA A:GLY122 4.1 14.9 1.0
N2 A:SEY205 4.6 27.1 0.3
O A:ARG39 4.6 17.9 1.0
N A:GLY122 4.8 16.4 1.0
CE1 A:TYR41 4.8 13.6 1.0
C A:SEY205 4.8 32.0 0.3
CD2 A:TYR41 4.9 12.3 1.0

Chlorine binding site 2 out of 5 in 7cqo

Go back to Chlorine Binding Sites List in 7cqo
Chlorine binding site 2 out of 5 in the Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:25.5
occ:1.00
 N A:THR87 3.1 17.1 1.0
O A:HOH373 3.2 16.3 1.0
O A:THR87 3.2 19.9 1.0
O A:HOH398 3.2 34.7 1.0
N A:ARG86 3.5 16.3 1.0
SE A:SEY206 3.5 46.9 0.4
O A:HOH314 3.5 38.9 1.0
C A:GLY85 3.6 20.9 1.0
C A:THR87 3.6 18.8 1.0
OD1 A:ASN83 3.6 22.0 1.0
OG A:SER90 3.6 26.3 1.0
N A:GLY85 3.7 17.6 1.0
CA A:GLY85 3.8 20.4 1.0
CA A:THR87 3.8 15.7 1.0
O A:HOH383 4.1 21.8 1.0
C A:ARG86 4.1 18.4 1.0
CB A:THR87 4.1 15.5 1.0
O A:GLY85 4.2 22.1 1.0
OD1 A:ASP84 4.2 16.7 1.0
CA A:ARG86 4.3 15.6 1.0
N A:PRO88 4.4 19.6 1.0
NA A:NA207 4.7 23.5 1.0
OG1 A:THR87 4.7 16.5 1.0
C A:ASP84 4.8 15.0 1.0
CG A:ASN83 4.8 19.2 1.0
CB A:SER90 4.8 27.4 1.0
N A:ASP84 4.8 13.8 1.0
CA A:PRO88 4.9 19.8 1.0
C A:SEY206 4.9 31.2 0.4
O A:HOH368 4.9 27.8 0.5

Chlorine binding site 3 out of 5 in 7cqo

Go back to Chlorine Binding Sites List in 7cqo
Chlorine binding site 3 out of 5 in the Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl210

b:24.6
occ:1.00
 OG A:SER42 2.9 21.0 1.0
N A:GLY44 3.2 17.2 1.0
CA A:GLY44 3.5 16.1 1.0
CB A:SER42 3.5 20.6 1.0
CA A:GLN139 3.5 18.0 1.0
CD1 A:ILE142 3.8 32.5 1.0
CB A:GLN139 3.9 27.7 1.0
N A:GLN139 3.9 20.4 1.0
CG A:GLN139 4.1 33.3 1.0
CG1 A:ILE142 4.1 23.0 1.0
N A:LEU43 4.2 18.4 1.0
C A:VAL138 4.3 20.6 1.0
CG2 A:VAL138 4.3 21.7 1.0
O A:VAL138 4.4 20.2 1.0
C A:SER42 4.4 19.8 1.0
C A:LEU43 4.4 15.7 1.0
C A:GLY44 4.5 13.4 1.0
CA A:SER42 4.6 18.4 1.0
N A:ASN45 4.6 14.2 1.0
C A:GLN139 4.8 21.6 1.0
O A:SER42 4.8 17.6 1.0
CA A:LEU43 4.8 16.9 1.0

Chlorine binding site 4 out of 5 in 7cqo

Go back to Chlorine Binding Sites List in 7cqo
Chlorine binding site 4 out of 5 in the Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:36.3
occ:1.00
 O A:HOH386 2.9 28.9 1.0
ND2 A:ASN83 3.3 23.1 1.0
CB A:PRO97 3.6 18.8 1.0
CA A:PRO97 3.7 15.2 1.0
CB A:ASN83 4.0 17.4 1.0
N A:PRO97 4.0 17.6 1.0
CG A:ASN83 4.1 19.2 1.0
CD A:PRO97 4.3 19.4 1.0
O A:ASN83 4.3 15.1 1.0
CG A:PRO97 4.3 21.3 1.0
C A:ILE96 4.5 18.2 1.0
O A:ILE96 4.7 16.6 1.0
ND2 A:ASN92 4.9 18.7 1.0
C A:ASN83 5.0 14.7 1.0

Chlorine binding site 5 out of 5 in 7cqo

Go back to Chlorine Binding Sites List in 7cqo
Chlorine binding site 5 out of 5 in the Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Lysozyme Grown in Lcp Soaked with Selenourea For 6 Min within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:46.1
occ:1.00
 O A:HOH352 3.4 39.7 1.0
CE2 A:PHE56 3.6 17.8 1.0
O A:HOH372 3.6 40.3 1.0
CZ3 A:TRP141 3.9 23.9 1.0
CB A:ARG23 4.2 26.5 1.0
NZ A:LYS51 4.2 30.8 1.0
CD A:ARG23 4.2 23.4 1.0
CZ A:PHE56 4.4 16.1 1.0
CD2 A:PHE56 4.5 18.4 1.0
CD A:LYS51 4.6 20.9 1.0
CE A:LYS51 4.7 28.9 1.0
CG A:ARG23 4.7 20.8 1.0
CH2 A:TRP141 4.7 24.1 1.0
CE3 A:TRP141 4.8 19.1 1.0
NE A:ARG23 4.8 26.1 1.0

Reference:

Z.P.Luo, D.F.Li. Selenourea For Experimental Phasing of Membrane Protein Crystals Grown in Lipid Cubic Phase To Be Published.
Page generated: Mon Jul 29 19:51:43 2024

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