Chlorine in PDB 7cvs: Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment
Protein crystallography data
The structure of Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment, PDB code: 7cvs
was solved by
K.Park,
K.Mersch,
J.Robertson,
H.-H.Lim,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
33.96 /
3.01
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
232.909,
96.721,
170.731,
90,
131.65,
90
|
R / Rfree (%)
|
20.1 /
25.5
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment
(pdb code 7cvs). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment, PDB code: 7cvs:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 7cvs
Go back to
Chlorine Binding Sites List in 7cvs
Chlorine binding site 1 out
of 4 in the Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl501
b:151.6
occ:1.00
|
OH
|
A:TYR445
|
2.6
|
127.6
|
1.0
|
OG
|
A:SER107
|
2.9
|
136.1
|
1.0
|
N
|
A:ILE356
|
3.2
|
102.9
|
1.0
|
CA
|
A:GLY355
|
3.3
|
102.9
|
1.0
|
CB
|
A:SER107
|
3.4
|
134.9
|
1.0
|
N
|
A:PHE357
|
3.5
|
95.5
|
1.0
|
CB
|
A:PHE357
|
3.6
|
100.2
|
1.0
|
CZ
|
A:TYR445
|
3.7
|
118.1
|
1.0
|
C
|
A:GLY355
|
3.8
|
98.9
|
1.0
|
CD1
|
A:ILE109
|
4.0
|
87.3
|
1.0
|
CE2
|
A:TYR445
|
4.0
|
110.5
|
1.0
|
CA
|
A:PHE357
|
4.2
|
95.4
|
1.0
|
CA
|
A:GLY149
|
4.2
|
95.2
|
1.0
|
CA
|
A:ILE356
|
4.2
|
102.6
|
1.0
|
C
|
A:ILE356
|
4.3
|
99.1
|
1.0
|
CG2
|
A:ILE356
|
4.3
|
96.9
|
1.0
|
CA
|
A:SER107
|
4.3
|
128.6
|
1.0
|
N
|
A:GLY149
|
4.4
|
98.9
|
1.0
|
CG1
|
A:ILE109
|
4.5
|
87.6
|
1.0
|
OE2
|
A:GLU148
|
4.5
|
128.1
|
1.0
|
CG
|
A:GLU148
|
4.5
|
116.2
|
1.0
|
N
|
A:GLY355
|
4.6
|
92.4
|
1.0
|
CG
|
A:PHE357
|
4.7
|
105.5
|
1.0
|
CD1
|
A:PHE357
|
4.8
|
111.2
|
1.0
|
CB
|
A:ILE356
|
4.8
|
96.3
|
1.0
|
CE1
|
A:TYR445
|
4.8
|
120.4
|
1.0
|
O
|
A:GLY355
|
5.0
|
100.7
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 7cvs
Go back to
Chlorine Binding Sites List in 7cvs
Chlorine binding site 2 out
of 4 in the Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:184.3
occ:1.00
|
N
|
A:SER107
|
2.7
|
124.6
|
1.0
|
N
|
A:GLY108
|
3.3
|
126.0
|
1.0
|
CB
|
A:SER107
|
3.4
|
134.9
|
1.0
|
CA
|
A:SER107
|
3.4
|
128.6
|
1.0
|
CD
|
A:PRO110
|
3.5
|
103.4
|
1.0
|
C
|
A:GLY106
|
3.6
|
122.0
|
1.0
|
CG
|
A:PRO110
|
3.7
|
98.7
|
1.0
|
CA
|
A:GLY106
|
3.7
|
123.7
|
1.0
|
C
|
A:SER107
|
3.8
|
128.2
|
1.0
|
O
|
A:GLY105
|
3.8
|
134.4
|
1.0
|
CZ
|
A:PHE348
|
4.4
|
92.8
|
1.0
|
CG2
|
A:ILE448
|
4.4
|
85.8
|
1.0
|
CA
|
A:GLY108
|
4.4
|
122.0
|
1.0
|
OG
|
A:SER107
|
4.4
|
136.1
|
1.0
|
CB
|
A:PRO110
|
4.6
|
96.1
|
1.0
|
O
|
A:GLY106
|
4.6
|
121.4
|
1.0
|
C
|
A:GLY105
|
4.7
|
124.1
|
1.0
|
N
|
A:GLY106
|
4.7
|
127.7
|
1.0
|
CD1
|
A:ILE448
|
4.7
|
93.7
|
1.0
|
CE1
|
A:PHE348
|
4.8
|
102.3
|
1.0
|
N
|
A:PRO110
|
4.9
|
93.2
|
1.0
|
N
|
A:ILE109
|
4.9
|
109.1
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 7cvs
Go back to
Chlorine Binding Sites List in 7cvs
Chlorine binding site 3 out
of 4 in the Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl501
b:249.8
occ:1.00
|
OH
|
B:TYR445
|
2.4
|
137.8
|
1.0
|
OG
|
B:SER107
|
3.0
|
114.0
|
1.0
|
CA
|
B:GLY355
|
3.3
|
109.9
|
1.0
|
N
|
B:ILE356
|
3.4
|
105.4
|
1.0
|
CB
|
B:SER107
|
3.4
|
121.3
|
1.0
|
CZ
|
B:TYR445
|
3.5
|
131.5
|
1.0
|
CD1
|
B:ILE109
|
3.6
|
96.5
|
1.0
|
N
|
B:PHE357
|
3.7
|
127.6
|
1.0
|
CB
|
B:PHE357
|
3.9
|
111.5
|
1.0
|
C
|
B:GLY355
|
3.9
|
109.7
|
1.0
|
CE2
|
B:TYR445
|
4.1
|
126.8
|
1.0
|
OE2
|
B:GLU148
|
4.2
|
140.1
|
1.0
|
CG
|
B:GLU148
|
4.2
|
123.8
|
1.0
|
CG1
|
B:ILE109
|
4.2
|
95.7
|
1.0
|
CA
|
B:GLY149
|
4.2
|
97.9
|
1.0
|
CA
|
B:SER107
|
4.2
|
124.6
|
1.0
|
N
|
B:GLY149
|
4.4
|
107.4
|
1.0
|
CA
|
B:PHE357
|
4.4
|
115.6
|
1.0
|
CA
|
B:ILE356
|
4.5
|
108.3
|
1.0
|
CE1
|
B:TYR445
|
4.6
|
126.1
|
1.0
|
C
|
B:ILE356
|
4.6
|
122.1
|
1.0
|
N
|
B:GLY355
|
4.6
|
110.4
|
1.0
|
CG2
|
B:ILE356
|
4.7
|
98.1
|
1.0
|
CD
|
B:GLU148
|
4.7
|
138.1
|
1.0
|
CD1
|
B:PHE357
|
4.8
|
119.5
|
1.0
|
CG
|
B:PHE357
|
4.8
|
116.9
|
1.0
|
C
|
B:SER107
|
5.0
|
121.6
|
1.0
|
CB
|
B:ILE109
|
5.0
|
96.0
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 7cvs
Go back to
Chlorine Binding Sites List in 7cvs
Chlorine binding site 4 out
of 4 in the Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl502
b:233.9
occ:1.00
|
N
|
B:SER107
|
3.1
|
137.7
|
1.0
|
CB
|
B:SER107
|
3.5
|
121.3
|
1.0
|
N
|
B:GLY108
|
3.7
|
125.7
|
1.0
|
CD
|
B:PRO110
|
3.7
|
122.2
|
1.0
|
CG
|
B:PRO110
|
3.7
|
91.7
|
1.0
|
CA
|
B:SER107
|
3.8
|
124.6
|
1.0
|
C
|
B:GLY106
|
4.0
|
133.3
|
1.0
|
CZ
|
B:PHE348
|
4.1
|
106.9
|
1.0
|
CA
|
B:GLY106
|
4.2
|
125.4
|
1.0
|
CG2
|
B:ILE448
|
4.2
|
114.9
|
1.0
|
O
|
B:GLY105
|
4.2
|
117.3
|
1.0
|
C
|
B:SER107
|
4.2
|
121.6
|
1.0
|
CE1
|
B:PHE348
|
4.4
|
105.2
|
1.0
|
OG
|
B:SER107
|
4.4
|
114.0
|
1.0
|
CD1
|
B:ILE448
|
4.5
|
87.9
|
1.0
|
CB
|
B:PRO110
|
4.5
|
93.3
|
1.0
|
CA
|
B:GLY108
|
4.7
|
119.2
|
1.0
|
N
|
B:PRO110
|
5.0
|
115.9
|
1.0
|
|
Reference:
K.Park,
K.Mersch,
J.Robertson,
H.-H.Lim.
Crystal Structure of the C85A/L194A Mutant Clc-EC1 with Fab Fragment To Be Published.
Page generated: Mon Jul 29 19:55:46 2024
|