Chlorine in PDB 7czm: Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex

Protein crystallography data

The structure of Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex, PDB code: 7czm was solved by Z.X.Zhou, L.F.Pan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.96 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.978, 70.624, 56.337, 90, 109.27, 90
R / Rfree (%) 20.3 / 22.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex (pdb code 7czm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex, PDB code: 7czm:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7czm

Go back to Chlorine Binding Sites List in 7czm
Chlorine binding site 1 out of 4 in the Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1602

b:43.6
occ:1.00
NZ A:LYS1568 2.6 80.3 1.0
CE A:LYS1568 3.5 73.4 1.0
CD1 A:LEU1578 3.6 68.0 1.0
CA A:GLY1579 3.9 48.6 1.0
O A:ALA1567 4.0 51.1 1.0
CD A:LYS1568 4.1 65.3 1.0
N A:GLY1579 4.3 54.6 1.0
NE2 A:GLN1566 4.5 54.5 1.0
CD A:GLN1566 4.5 56.9 1.0
CA A:LYS1568 4.6 53.7 1.0
CG A:GLN1566 4.9 43.9 1.0
OE1 A:GLN1566 4.9 59.4 1.0
CG A:LEU1578 4.9 61.6 1.0
CD2 A:LEU1578 5.0 69.0 1.0
C A:ALA1567 5.0 51.2 1.0

Chlorine binding site 2 out of 4 in 7czm

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Chlorine binding site 2 out of 4 in the Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1603

b:46.0
occ:0.50
NZ A:LYS1569 3.4 99.9 1.0
N A:GLN1571 3.9 67.3 1.0
N A:ALA1570 4.2 64.2 1.0
CB A:ALA1570 4.2 73.3 1.0
CB A:GLN1571 4.2 82.2 1.0
CA A:ALA1570 4.5 63.3 1.0
CE A:LYS1569 4.6 97.5 1.0
C A:ALA1570 4.6 64.4 1.0
CA A:GLN1571 4.7 63.5 1.0
CB A:LYS1569 4.8 68.4 1.0

Chlorine binding site 3 out of 4 in 7czm

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Chlorine binding site 3 out of 4 in the Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1702

b:52.0
occ:1.00
CH2 B:TRP1590 3.3 79.6 1.0
NH2 A:ARG1499 3.4 33.1 1.0
CZ2 B:TRP1590 3.4 75.8 1.0
CZ A:ARG1499 3.6 34.6 1.0
N B:GLU1494 3.7 35.5 1.0
NE A:ARG1499 4.0 34.9 1.0
NH1 A:ARG1499 4.1 36.6 1.0
CA B:SER1493 4.1 38.2 1.0
CD1 A:ILE1498 4.3 68.2 1.0
C B:SER1493 4.4 37.0 1.0
CB B:GLU1494 4.5 48.5 1.0
CB B:SER1493 4.6 34.1 1.0
CA B:GLU1494 4.6 38.7 1.0
CZ3 B:TRP1590 4.7 72.6 1.0
O B:HIS1492 4.8 36.6 1.0
OG B:SER1493 4.8 39.0 1.0
CG B:GLU1494 4.8 64.9 1.0
O B:GLU1494 4.8 36.9 1.0
CE2 B:TRP1590 4.8 76.1 1.0
CD A:ARG1499 4.8 38.5 1.0

Chlorine binding site 4 out of 4 in 7czm

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Chlorine binding site 4 out of 4 in the Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of FIP200 Claw/P-Optineurin Lir Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1703

b:55.0
occ:1.00
NH1 B:ARG1584 3.0 65.7 1.0
NH2 B:ARG1573 3.6 69.2 1.0
CD B:ARG1584 3.6 56.0 1.0
N B:SER1532 3.6 46.9 1.0
OG B:SER1532 3.9 65.8 1.0
CB B:SER1532 4.0 59.1 1.0
CZ B:ARG1584 4.1 66.5 1.0
ND1 B:HIS1531 4.3 58.3 1.0
NE B:ARG1584 4.3 57.5 1.0
CE1 B:HIS1531 4.3 69.0 1.0
CA B:HIS1531 4.3 43.1 1.0
CG B:HIS1531 4.4 52.7 1.0
CZ B:PHE1574 4.4 48.2 1.0
NE2 B:HIS1531 4.4 62.8 1.0
CA B:SER1532 4.5 51.6 1.0
CD2 B:HIS1531 4.5 58.0 1.0
C B:HIS1531 4.5 46.9 1.0
CD B:ARG1573 4.7 51.9 1.0
CZ B:ARG1573 4.8 61.9 1.0
CE1 B:PHE1574 4.8 45.9 1.0
CG B:ARG1584 4.9 57.9 1.0
CB B:HIS1531 5.0 38.1 1.0

Reference:

Z.Zhou, J.Liu, T.Fu, P.Wu, C.Peng, X.Gong, Y.Wang, M.Zhang, Y.Li, Y.Wang, X.Xu, M.Li, L.Pan. Phosphorylation Regulates the Binding of Autophagy Receptors to FIP200 Claw Domain For Selective Autophagy Initiation. Nat Commun V. 12 1570 2021.
ISSN: ESSN 2041-1723
PubMed: 33692357
DOI: 10.1038/S41467-021-21874-1
Page generated: Sat Apr 3 14:37:46 2021

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