Chlorine in PDB 7d5g: Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism

Enzymatic activity of Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism

All present enzymatic activity of Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism:
5.1.3.11;

Protein crystallography data

The structure of Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism, PDB code: 7d5g was solved by R.J.Yang, Y.H.Feng, J.F.Andrew, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 66.49 / 1.60
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 90.729, 90.729, 97.723, 90, 90, 90
R / Rfree (%) 16.6 / 20.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism (pdb code 7d5g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism, PDB code: 7d5g:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7d5g

Go back to Chlorine Binding Sites List in 7d5g
Chlorine binding site 1 out of 3 in the Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:14.6
occ:1.00
O A:HOH596 3.1 13.7 1.0
NH1 A:ARG56 3.3 15.2 1.0
N A:CYS374 3.3 11.2 1.0
N A:HIS377 3.4 13.9 1.0
O A:CYS374 3.4 13.5 1.0
CB A:CYS374 3.4 16.3 1.0
N A:TYR376 3.4 13.7 1.0
C A:CYS374 3.5 13.1 1.0
CA A:CYS374 3.6 13.5 1.0
CD2 A:HIS377 3.6 12.6 1.0
CB A:TYR376 3.7 13.2 1.0
CD2 A:TYR376 3.8 12.4 1.0
CD A:ARG56 3.9 12.5 1.0
CA A:TYR376 4.0 12.7 1.0
SG A:CYS374 4.0 15.0 1.0
C A:TYR376 4.1 14.6 1.0
CZ A:ARG56 4.1 15.1 1.0
CB A:HIS377 4.2 11.0 1.0
CG A:HIS377 4.2 12.2 1.0
N A:PRO375 4.2 12.3 1.0
O6 B:FRU1 4.2 29.0 1.0
CG A:TYR376 4.3 12.9 1.0
CZ2 A:TRP307 4.3 14.3 1.0
CA A:HIS377 4.4 14.3 1.0
NE A:ARG56 4.4 11.6 1.0
C A:LYS373 4.4 16.2 1.0
C A:PRO375 4.4 12.2 1.0
HO6 B:FRU1 4.5 34.8 1.0
O A:TRP372 4.6 16.3 1.0
CA A:LYS373 4.6 15.3 1.0
NE1 A:TRP307 4.7 14.6 1.0
NE2 A:HIS377 4.7 13.6 1.0
CA A:PRO375 4.7 14.1 1.0
CE2 A:TRP307 4.9 12.7 1.0
CE2 A:TYR376 4.9 11.8 1.0

Chlorine binding site 2 out of 3 in 7d5g

Go back to Chlorine Binding Sites List in 7d5g
Chlorine binding site 2 out of 3 in the Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:52.4
occ:1.00
OD2 A:ASP256 2.8 28.2 1.0
O A:GLU272 2.9 21.9 1.0
O A:HOH807 3.0 41.7 1.0
OD1 A:ASP256 3.1 31.0 1.0
CG A:LEU276 3.2 22.6 0.5
CG A:ASP256 3.3 27.0 1.0
C A:GLU272 3.6 19.8 1.0
CD1 A:LEU276 3.6 24.3 0.5
CA A:GLU272 3.7 18.1 1.0
CB A:GLU272 3.7 22.5 1.0
CD2 A:LEU276 3.8 22.9 0.5
CG A:LYS323 3.9 26.2 1.0
CB A:ALA275 4.2 17.7 1.0
N A:LEU276 4.2 17.6 0.5
N A:LEU276 4.3 17.6 0.5
CB A:LYS323 4.3 20.5 1.0
CB A:LEU276 4.3 21.0 0.5
CG A:GLU272 4.3 26.0 1.0
CB A:LEU276 4.3 21.0 0.5
CD A:LYS323 4.4 30.0 1.0
O A:HOH788 4.5 34.4 1.0
CE A:LYS323 4.6 40.0 1.0
CA A:LEU276 4.7 18.0 0.5
CA A:LEU276 4.7 18.0 0.5
CB A:ASP256 4.8 20.1 1.0
N A:LYS273 4.8 17.6 1.0
C A:ALA275 4.9 16.4 1.0

Chlorine binding site 3 out of 3 in 7d5g

Go back to Chlorine Binding Sites List in 7d5g
Chlorine binding site 3 out of 3 in the Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:28.4
occ:1.00
O A:HOH672 3.1 40.1 1.0
ND2 A:ASN86 3.2 18.6 1.0
CB A:ASN86 3.7 16.1 1.0
O A:GLU82 3.8 13.8 1.0
CG A:ASN86 3.9 19.5 1.0
CD1 A:PHE83 3.9 15.0 1.0
CA A:PHE83 3.9 13.1 1.0
C A:GLU82 4.0 12.3 1.0
O A:HOH636 4.1 15.7 1.0
N A:PHE83 4.1 12.3 1.0
CB A:GLU82 4.4 16.0 1.0
CG A:LYS87 4.6 16.7 1.0
CB A:PHE83 4.6 12.2 1.0
CE A:LYS87 4.7 22.7 1.0
CG A:PHE83 4.7 14.3 1.0
CE1 A:PHE83 4.8 18.0 1.0
CA A:GLU82 4.8 13.7 1.0
CA A:GLY31 4.9 16.6 1.0

Reference:

R.J.Yang, Y.H.Feng, J.F.Andrew. Crystal Structure of the Csce with Ligand to Have A Insight Into the Catalytic Mechanism To Be Published.
Page generated: Fri Dec 17 08:50:04 2021

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