Chlorine in PDB 7dfo: Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose

All present enzymatic activity of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose:
3.2.1.8;

The structure of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose, PDB code: 7dfo was solved by Z.Fujimoto, N.Kishine, S.Kaneko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.06 / 2.00
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	142.709, 142.709, 72.454, 90, 90, 120
R / Rfree (%)	16.5 / 21.8

The structure of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose also contains other interesting chemical elements:

Sodium

(Na)

13 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 43;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose (pdb code 7dfo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 43 binding sites of Chlorine where determined in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose, PDB code: 7dfo:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 43 in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl401 b:33.9 occ:1.00 N A:THR148 3.2 26.6 1.0 NH1 A:ARG144 3.2 26.9 1.0 O A:ASP110 3.7 31.1 1.0 CB A:ASP110 3.8 30.9 1.0 O A:THR148 3.9 28.8 1.0 CA A:GLY147 3.9 27.9 1.0 CB A:THR148 3.9 29.7 1.0 CA A:THR148 4.0 28.5 1.0 C A:GLY147 4.1 26.6 1.0 CZ A:ARG144 4.1 25.0 1.0 C A:ASP110 4.1 28.6 1.0 CA A:ASP110 4.2 28.5 1.0 NH2 A:ARG144 4.2 26.9 1.0 OG1 A:THR148 4.3 36.2 1.0 C A:THR148 4.4 28.1 1.0 O A:HOH592 4.8 30.8 1.0 CG A:ASP110 4.8 31.2 1.0 OD1 A:ASP110 4.8 34.2 1.0 O A:HOH603 5.0 43.8 1.0

Chlorine binding site 2 out of 43 in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl402 b:37.6 occ:1.00 O A:HOH604 3.1 43.5 1.0 N A:THR120 3.2 24.2 1.0 CB A:THR119 3.6 25.2 1.0 CA A:THR119 3.6 23.1 1.0 O A:THR120 3.7 27.5 1.0 C A:THR119 3.9 23.4 1.0 CG2 A:THR119 4.0 26.8 1.0 CA A:THR120 4.2 25.7 1.0 CB A:THR120 4.4 25.8 1.0 C A:THR120 4.4 25.7 1.0 O A:HOH540 4.6 39.6 1.0 O A:HOH567 4.6 35.6 1.0 OG1 A:THR120 4.7 25.6 1.0 OG1 A:THR119 4.8 24.8 1.0 N A:THR119 5.0 23.1 1.0

Chlorine binding site 3 out of 43 in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl403 b:41.0 occ:1.00 ND2 A:ASN123 3.1 29.4 1.0 OD1 A:ASN123 3.9 32.7 1.0 CG A:ASN123 3.9 29.6 1.0

Chlorine binding site 4 out of 43 in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:30.7 occ:1.00 OG1 A:THR145 2.9 25.4 1.0 O A:HOH566 3.1 24.9 1.0 N D:TYR122 3.3 25.9 1.0 ND2 A:ASN93 3.3 23.2 1.0 O D:HOH447 3.4 42.9 1.0 CB A:THR145 3.7 23.9 1.0 O A:HOH531 3.7 27.8 1.0 CA D:ARG121 3.7 25.8 1.0 CD1 D:TYR122 4.0 23.6 1.0 O D:THR120 4.0 25.5 1.0 C D:ARG121 4.0 27.1 1.0 N A:THR145 4.1 22.9 1.0 O A:PHE67 4.2 21.0 1.0 O D:TYR122 4.3 26.2 1.0 CD D:ARG121 4.3 34.0 1.0 CA D:TYR122 4.3 26.4 1.0 CB D:TYR122 4.3 25.5 1.0 O D:HOH433 4.5 30.3 1.0 CA A:THR145 4.6 23.9 1.0 CB D:ARG121 4.6 28.9 1.0 C A:ARG144 4.6 23.1 1.0 CG A:ASN93 4.6 23.3 1.0 CG D:TYR122 4.6 24.6 1.0 N D:ARG121 4.7 24.3 1.0 C D:THR120 4.8 24.5 1.0 C D:TYR122 4.8 24.4 1.0 CG2 A:THR145 4.9 25.1 1.0 NH1 D:ARG121 4.9 44.3 1.0 CE1 D:TYR122 5.0 24.9 1.0

Chlorine binding site 5 out of 43 in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl405 b:29.2 occ:1.00 OG A:SER142 3.2 36.8 1.0 N A:THR113 3.3 26.8 1.0 CA A:GLY112 3.6 29.4 1.0 N A:SER142 3.6 26.6 1.0 O A:THR113 3.8 27.0 1.0 CB A:GLN141 3.8 24.1 1.0 O A:HOH548 4.0 37.0 1.0 N A:GLN141 4.0 20.6 1.0 C A:GLY112 4.0 28.6 1.0 CB A:SER142 4.0 31.9 1.0 C A:GLN141 4.1 27.4 1.0 CA A:GLN141 4.2 23.6 1.0 CG A:ARG140 4.2 22.4 1.0 CA A:THR113 4.4 28.4 1.0 CA A:SER142 4.4 29.3 1.0 NE A:ARG140 4.5 24.9 1.0 C A:THR113 4.6 27.6 1.0 CB A:THR113 4.6 32.1 1.0 CZ A:ARG140 4.8 26.0 1.0 O A:GLY111 4.8 30.4 1.0 OG1 A:THR113 4.8 35.6 1.0 O A:SER142 4.9 25.4 1.0 CD A:ARG140 4.9 23.3 1.0 OE1 A:GLN141 4.9 29.3 1.0 N A:GLY112 4.9 27.6 1.0 NH2 A:ARG140 5.0 25.4 1.0 O A:HOH575 5.0 31.8 1.0 C A:ARG140 5.0 22.3 1.0

Chlorine binding site 6 out of 43 in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl301 b:36.6 occ:1.00 OG1 B:THR130 3.1 35.6 1.0 N B:THR130 3.3 32.2 1.0 CB B:THR130 3.7 35.6 1.0 O B:HOH407 4.0 27.2 1.0 CA B:THR130 4.1 33.6 1.0 C B:GLY129 4.3 34.8 1.0 CA B:GLY129 4.3 32.0 1.0 O B:THR130 5.0 31.5 1.0

Chlorine binding site 7 out of 43 in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl302 b:33.8 occ:1.00 OG B:SER142 2.8 53.5 1.0 N B:THR113 3.4 30.9 1.0 N B:SER142 3.6 35.0 1.0 O B:THR113 3.7 27.7 1.0 NH2 B:ARG140 3.8 25.7 0.5 CA B:GLY112 3.8 38.9 1.0 CZ B:ARG140 3.9 24.0 0.5 N B:GLN141 4.1 28.5 1.0 CB B:GLN141 4.1 33.1 1.0 CG B:ARG140 4.1 27.3 0.5 CB B:SER142 4.1 45.1 1.0 CG B:ARG140 4.1 29.0 0.5 C B:GLY112 4.2 37.6 1.0 NH1 B:ARG140 4.2 23.1 0.5 NE B:ARG140 4.3 26.4 0.5 C B:GLN141 4.3 31.8 1.0 CA B:THR113 4.4 34.8 1.0 NE B:ARG140 4.4 30.6 0.5 CA B:GLN141 4.4 32.5 1.0 CA B:SER142 4.4 37.5 1.0 C B:THR113 4.5 30.0 1.0 O B:SER142 4.6 40.6 1.0 CB B:THR113 4.6 35.9 1.0 CD B:ARG140 4.7 26.5 0.5 CD B:ARG140 4.9 29.8 0.5 CZ B:ARG140 4.9 29.6 0.5 NH2 B:ARG140 4.9 32.9 0.5 C B:ARG140 5.0 28.3 1.0

Chlorine binding site 8 out of 43 in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl301 b:34.0 occ:1.00 OG1 C:THR6 3.1 50.9 1.0 NE2 C:GLN8 3.3 35.8 1.0 N C:THR5 3.4 32.6 1.0 O C:HOH439 3.4 39.9 1.0 N C:THR6 3.5 35.3 1.0 OG1 C:THR5 3.8 32.8 1.0 CA C:ILE4 4.0 29.1 1.0 CB C:THR6 4.0 42.8 1.0 CG2 C:THR6 4.1 43.3 1.0 C C:ILE4 4.1 29.4 1.0 CG2 C:ILE4 4.2 32.0 1.0 CA C:THR6 4.3 38.2 1.0 CA C:THR5 4.3 32.2 1.0 C C:THR5 4.3 32.5 1.0 O C:THR6 4.3 38.6 1.0 O C:VAL3 4.4 40.2 1.0 CD C:GLN8 4.6 34.6 1.0 CB C:THR5 4.7 33.5 1.0 CB C:ILE4 4.7 29.2 1.0 C C:THR6 4.8 36.7 1.0

Chlorine binding site 9 out of 43 in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl302 b:38.1 occ:1.00 O C:HOH500 2.6 41.9 1.0 O C:HOH491 3.0 47.2 1.0 NH1 C:ARG58 3.2 35.3 1.0 O C:HOH436 3.3 37.4 1.0 CG C:ARG58 3.6 30.6 1.0 CD C:ARG58 3.8 32.6 1.0 CD2 C:PHE155 3.8 29.8 1.0 CB C:PHE155 4.0 27.2 1.0 CE2 C:PHE168 4.2 30.0 1.0 CZ C:ARG58 4.2 33.1 1.0 CG C:PHE155 4.3 29.0 1.0 NE C:ARG58 4.5 31.9 1.0 CZ C:PHE168 4.5 30.7 1.0 CE2 C:PHE155 4.8 29.5 1.0 OD1 C:ASP156 4.9 33.6 1.0

Chlorine binding site 10 out of 43 in the Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Glycoside Hydrolase Family 11 Beta-Xylanase From Streptomyces Olivaceoviridis E-86 in Complex with 4-O-Methyl-Alpha-D- Glucuronopyranosyl Xylotetraose within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl303 b:34.3 occ:1.00 N C:THR113 3.3 29.8 1.0 N C:SER142 3.6 35.0 1.0 O C:THR113 3.6 30.2 1.0 OG C:SER142 3.6 44.2 1.0 N C:GLN141 3.8 29.6 1.0 CA C:GLY112 3.8 31.1 1.0 NH1 C:ARG140 3.9 45.5 1.0 CG C:ARG140 4.0 30.6 1.0 CB C:GLN141 4.0 34.9 1.0 C C:GLY112 4.1 32.0 1.0 CZ C:ARG140 4.1 41.6 1.0 C C:GLN141 4.2 34.0 1.0 CA C:GLN141 4.2 32.8 1.0 CA C:THR113 4.2 31.0 1.0 C C:THR113 4.4 28.8 1.0 CB C:SER142 4.4 37.4 1.0 CA C:SER142 4.5 37.7 1.0 O C:SER142 4.5 34.1 1.0 NE C:ARG140 4.5 39.6 1.0 CB C:THR113 4.5 32.2 1.0 NH2 C:ARG140 4.5 41.5 1.0 CD C:ARG140 4.8 34.6 1.0 C C:ARG140 4.8 30.0 1.0 O C:GLY111 4.9 35.9 1.0 C C:SER142 4.9 36.2 1.0 CB C:ARG140 5.0 30.8 1.0

Z.Fujimoto, K.Naomi, K.Teramoto, S.Tsutsui, S.Kaneko. Structure-Based Substrate Specificity of GH11 Xylanase From Streptomyces Olivaceoviridis E-86 To Be Published.