Chlorine in PDB 7dit: Structure of PFGRX1 in the Intermediate State with Cadmium and Cesium

Enzymatic activity of Structure of PFGRX1 in the Intermediate State with Cadmium and Cesium

All present enzymatic activity of Structure of PFGRX1 in the Intermediate State with Cadmium and Cesium:
1.8.4.2;

Protein crystallography data

The structure of Structure of PFGRX1 in the Intermediate State with Cadmium and Cesium, PDB code: 7dit was solved by Y.Manickam, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.22 / 1.80
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 48.435, 48.435, 82.737, 90, 90, 120
R / Rfree (%) 16.7 / 20

Other elements in 7dit:

The structure of Structure of PFGRX1 in the Intermediate State with Cadmium and Cesium also contains other interesting chemical elements:

Caesium (Cs) 2 atoms
Cadmium (Cd) 7 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of PFGRX1 in the Intermediate State with Cadmium and Cesium (pdb code 7dit). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of PFGRX1 in the Intermediate State with Cadmium and Cesium, PDB code: 7dit:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7dit

Go back to Chlorine Binding Sites List in 7dit
Chlorine binding site 1 out of 2 in the Structure of PFGRX1 in the Intermediate State with Cadmium and Cesium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of PFGRX1 in the Intermediate State with Cadmium and Cesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:31.0
occ:0.83
CD A:CD203 2.8 20.7 0.6
NH1 A:ARG77 2.9 18.5 0.5
NH1 A:ARG77 3.1 18.8 0.5
O A:HOH390 3.2 37.3 1.0
O A:HOH384 3.4 31.2 1.0
O A:HOH352 3.4 37.6 1.0
O A:THR70 3.6 25.4 1.0
CA A:GLY86 3.7 16.8 1.0
CZ A:ARG77 3.8 17.2 0.5
O A:HOH393 3.8 34.0 1.0
OD2 A:ASP90 3.8 20.5 1.0
NH2 A:ARG77 3.8 14.6 0.5
O A:HOH425 3.9 42.4 1.0
CZ A:ARG77 4.0 16.0 0.5
NH2 A:ARG77 4.0 14.8 0.5
CL A:CL213 4.1 36.7 0.8
CG A:LYS72 4.3 24.8 1.0
C A:GLY86 4.4 17.6 1.0
N A:GLY87 4.5 16.8 1.0
CB A:THR70 4.5 20.3 1.0
C A:THR70 4.6 24.5 1.0
OG1 A:THR70 4.7 19.8 1.0
CG1 A:VAL84 4.8 20.1 1.0
CB A:LYS72 4.8 23.7 1.0
N A:GLY86 4.8 16.1 1.0
CG A:ASP90 4.8 22.4 1.0

Chlorine binding site 2 out of 2 in 7dit

Go back to Chlorine Binding Sites List in 7dit
Chlorine binding site 2 out of 2 in the Structure of PFGRX1 in the Intermediate State with Cadmium and Cesium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of PFGRX1 in the Intermediate State with Cadmium and Cesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl213

b:36.7
occ:0.85
CD A:CD203 2.7 20.7 0.6
O A:HOH325 3.0 20.4 1.0
O A:HOH333 3.2 30.4 1.0
NH2 A:ARG77 3.5 14.6 0.5
OD2 A:ASP90 3.5 20.5 1.0
O A:HOH310 3.8 33.9 1.0
NH2 A:ARG77 3.8 14.8 0.5
CL A:CL212 4.1 31.0 0.8
O2 A:MPO201 4.2 28.5 0.9
CG A:LYS72 4.3 24.8 1.0
O A:HOH425 4.3 42.4 1.0
N A:GLY87 4.4 16.8 1.0
CG A:ASP90 4.4 22.4 1.0
O1 A:MPO201 4.4 22.6 0.9
CZ A:ARG77 4.6 17.2 0.5
CA A:GLY87 4.6 15.1 1.0
OD1 A:ASP90 4.7 18.6 1.0
O A:HOH338 4.9 18.7 1.0
NH1 A:ARG77 4.9 18.5 0.5
CZ A:ARG77 4.9 16.0 0.5
S1 A:MPO201 5.0 20.0 0.9

Reference:

Y.Manickam, A.Sharma. Interaction of Metals with PFGRX1 To Be Published.
Page generated: Thu Nov 25 08:53:19 2021

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