Atomistry » Chlorine » PDB 7epg-7f6e » 7exs
Atomistry »
  Chlorine »
    PDB 7epg-7f6e »
      7exs »

Chlorine in PDB 7exs: Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R

Enzymatic activity of Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R

All present enzymatic activity of Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R:
1.5.3.1;

Protein crystallography data

The structure of Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R, PDB code: 7exs was solved by Y.Xin, C.Shen, M.W.Tang, Y.Shi, Z.T.Guo, Z.H.Gu, J.Shao, L.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.18 / 1.42
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 130.362, 47.141, 64.763, 90, 90, 90
R / Rfree (%) 19 / 21.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R (pdb code 7exs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R, PDB code: 7exs:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 7exs

Go back to Chlorine Binding Sites List in 7exs
Chlorine binding site 1 out of 7 in the Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl408

b:14.8
occ:1.00
 O A:HOH557 3.0 13.7 1.0
O3' A:FAD401 3.1 13.8 1.0
N A:GLY341 3.2 13.4 1.0
N A:THR315 3.4 12.7 1.0
N A:SER340 3.5 14.2 1.0
C3' A:FAD401 3.5 12.3 1.0
CA A:TYR314 3.7 13.0 1.0
C A:PHE339 3.8 13.3 1.0
CA A:GLY341 3.8 14.9 1.0
CB A:PHE339 3.9 11.9 1.0
C1' A:FAD401 4.1 13.2 1.0
C A:TYR314 4.1 13.5 1.0
CA A:PHE339 4.1 12.5 1.0
C A:SER340 4.2 14.5 1.0
CB A:TYR314 4.2 14.4 1.0
CA A:SER340 4.3 14.8 1.0
O A:PHE339 4.3 13.4 1.0
O A:LEU313 4.4 14.5 1.0
O A:THR315 4.4 14.4 1.0
N A:PHE339 4.4 13.4 1.0
OG A:SER45 4.4 14.7 1.0
O A:HOH515 4.4 15.1 1.0
C2' A:FAD401 4.5 12.9 1.0
CD1 A:TYR314 4.5 13.2 1.0
CA A:THR315 4.5 14.0 1.0
C5' A:FAD401 4.5 12.6 1.0
C4' A:FAD401 4.6 12.8 1.0
C A:GLY341 4.6 14.2 1.0
CB A:SER45 4.7 14.4 1.0
CG A:TYR314 4.7 11.8 1.0
CB A:THR315 4.7 15.4 1.0
N A:HIS342 4.8 12.3 1.0
C A:THR315 4.8 14.5 1.0
N A:TYR314 4.9 13.2 1.0
OG1 A:THR315 4.9 15.7 1.0

Chlorine binding site 2 out of 7 in 7exs

Go back to Chlorine Binding Sites List in 7exs
Chlorine binding site 2 out of 7 in the Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl409

b:47.3
occ:1.00
 N A:VAL88 2.9 16.7 1.0
CB A:VAL88 3.7 17.1 1.0
CA A:ARG87 3.8 15.5 1.0
C A:ARG87 3.8 15.8 1.0
CA A:VAL88 3.9 16.2 1.0
CG2 A:VAL88 3.9 18.2 1.0
O A:LEU86 4.0 21.3 1.0
O A:VAL88 4.3 21.3 1.0
NH2 A:ARG84 4.3 50.7 1.0
C A:VAL88 4.6 17.6 1.0
N A:ARG87 4.6 15.5 1.0
CG A:ARG87 4.6 20.1 1.0
C A:LEU86 4.6 18.8 1.0
CB A:ARG87 4.8 18.3 1.0
O A:ARG87 5.0 15.0 1.0

Chlorine binding site 3 out of 7 in 7exs

Go back to Chlorine Binding Sites List in 7exs
Chlorine binding site 3 out of 7 in the Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl410

b:53.7
occ:1.00
 NH2 A:ARG234 3.4 26.1 1.0
O A:HOH532 3.5 29.4 1.0
O A:HOH710 3.7 35.3 1.0
NE A:ARG234 4.0 21.2 1.0
CB A:ASP231 4.2 22.7 1.0
CZ A:ARG234 4.2 24.2 1.0
CA A:GLY301 4.6 17.4 1.0
N A:ASP231 4.6 26.2 1.0
O A:GLY301 4.7 19.2 1.0
CB A:ASP230 4.9 30.9 1.0

Chlorine binding site 4 out of 7 in 7exs

Go back to Chlorine Binding Sites List in 7exs
Chlorine binding site 4 out of 7 in the Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl411

b:45.4
occ:1.00
 NH1 A:ARG194 3.8 29.8 1.0
N A:ARG194 3.9 20.3 1.0
CB A:ARG194 4.2 20.0 1.0
CD A:ARG194 4.4 26.7 1.0
CG A:ARG194 4.4 21.1 1.0
CA A:LEU193 4.6 20.4 1.0
CA A:ARG194 4.6 19.6 1.0
C A:LEU193 4.7 19.3 1.0
O A:ARG194 4.8 20.3 1.0
CZ A:ARG194 4.9 30.2 1.0

Chlorine binding site 5 out of 7 in 7exs

Go back to Chlorine Binding Sites List in 7exs
Chlorine binding site 5 out of 7 in the Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl412

b:57.5
occ:1.00
 O A:HIS327 3.0 20.2 1.0
CB A:ARG326 3.8 23.2 1.0
CA A:PRO331 3.9 23.6 1.0
CB A:PRO331 3.9 26.7 1.0
CD A:ARG326 4.1 40.9 1.0
C A:HIS327 4.1 20.2 1.0
O A:PRO328 4.2 27.5 1.0
N A:PRO331 4.2 24.1 1.0
NH1 A:ARG326 4.3 47.5 1.0
C A:PRO328 4.3 26.3 1.0
NE A:ARG326 4.4 46.7 1.0
CA A:PRO328 4.5 25.1 1.0
CZ A:ARG326 4.5 49.1 1.0
C A:TRP330 4.6 23.3 1.0
O A:HOH642 4.6 33.0 1.0
CG A:ARG326 4.6 29.6 1.0
CD A:PRO331 4.8 24.5 1.0
O A:TRP330 4.8 21.9 1.0
C A:ARG326 4.8 18.7 1.0
N A:PRO328 4.9 23.5 1.0
N A:HIS327 4.9 18.1 1.0
CG A:PRO331 4.9 26.6 1.0
N A:TRP330 4.9 21.0 1.0
N A:GLU329 4.9 25.6 1.0
C A:GLU329 5.0 24.1 1.0

Chlorine binding site 6 out of 7 in 7exs

Go back to Chlorine Binding Sites List in 7exs
Chlorine binding site 6 out of 7 in the Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl413

b:54.2
occ:1.00
 N A:THR309 3.1 17.9 1.0
CA A:MET308 3.5 19.1 1.0
O A:THR309 3.5 21.3 1.0
CG A:MET308 3.5 30.1 1.0
C A:MET308 3.8 18.0 1.0
OG1 A:THR309 3.8 24.9 1.0
CB A:MET308 4.0 20.8 1.0
CA A:THR309 4.1 17.5 1.0
C A:THR309 4.3 19.2 1.0
CB A:THR309 4.5 21.8 1.0
O A:LEU307 4.7 21.2 1.0
N A:MET308 4.7 17.6 1.0
O A:MET308 5.0 17.6 1.0

Chlorine binding site 7 out of 7 in 7exs

Go back to Chlorine Binding Sites List in 7exs
Chlorine binding site 7 out of 7 in the Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl414

b:57.5
occ:1.00
 O A:THR89 4.1 17.5 1.0
CG1 A:VAL141 4.1 16.2 1.0
CG A:PRO241 4.3 17.2 1.0
CA A:GLY90 4.3 14.8 1.0
O A:HOH545 4.3 30.8 1.0
O A:HOH564 4.6 27.4 1.0
CZ A:PHE128 4.7 22.4 1.0
O A:GLU142 4.7 17.0 1.0
CE1 A:PHE128 4.8 23.6 1.0
C A:THR89 4.9 15.7 1.0
CB A:PRO241 5.0 17.6 1.0
C A:GLY90 5.0 15.9 1.0

Reference:

Y.Xin, C.Shen, M.W.Tang, Y.Shi, Z.T.Guo, Z.H.Gu, J.Shao, L.Zhang. Thermomicrobium Roseum Sarcosine Oxidase Mutant - S320R To Be Published.
Page generated: Mon Jul 29 20:38:23 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy