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Chlorine in PDB 7f2b: Crystal Structure of Sars-Cov-2 Nucleocapsid Protein C-Terminal Rna Binding Domain at 2.0A Resolution

Protein crystallography data

The structure of Crystal Structure of Sars-Cov-2 Nucleocapsid Protein C-Terminal Rna Binding Domain at 2.0A Resolution, PDB code: 7f2b was solved by C.Liu, Y.W.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.96 / 2.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 36.889, 37.207, 42.845, 78.69, 74.65, 65.46
R / Rfree (%) 15.7 / 21.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Sars-Cov-2 Nucleocapsid Protein C-Terminal Rna Binding Domain at 2.0A Resolution (pdb code 7f2b). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Sars-Cov-2 Nucleocapsid Protein C-Terminal Rna Binding Domain at 2.0A Resolution, PDB code: 7f2b:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7f2b

Go back to Chlorine Binding Sites List in 7f2b
Chlorine binding site 1 out of 2 in the Crystal Structure of Sars-Cov-2 Nucleocapsid Protein C-Terminal Rna Binding Domain at 2.0A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Sars-Cov-2 Nucleocapsid Protein C-Terminal Rna Binding Domain at 2.0A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:27.1
occ:0.50
CL A:CL401 0.0 27.1 0.5
CL A:CL401 2.4 37.8 0.5
NE1 A:TRP301 3.0 10.3 1.0
O B:HOH580 3.6 29.3 1.0
O B:HOH556 3.7 11.4 1.0
CD1 A:TRP301 3.9 10.1 1.0
CB B:ALA311 4.0 14.0 1.0
CE2 A:TRP301 4.1 9.7 1.0
CB A:ALA305 4.1 11.7 1.0
CZ2 A:TRP301 4.5 9.1 1.0
CG2 A:THR296 4.5 8.0 1.0
O B:HOH564 4.6 22.3 1.0

Chlorine binding site 2 out of 2 in 7f2b

Go back to Chlorine Binding Sites List in 7f2b
Chlorine binding site 2 out of 2 in the Crystal Structure of Sars-Cov-2 Nucleocapsid Protein C-Terminal Rna Binding Domain at 2.0A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Sars-Cov-2 Nucleocapsid Protein C-Terminal Rna Binding Domain at 2.0A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:37.8
occ:0.50
CL A:CL401 0.0 37.8 0.5
CL A:CL401 2.4 27.1 0.5
O B:HOH564 2.8 22.3 1.0
O B:HOH580 2.8 29.3 1.0
CB B:ALA311 3.8 14.0 1.0
O B:HOH556 3.9 11.4 1.0
N B:ALA311 4.7 8.2 1.0
CA B:ALA311 4.9 11.1 1.0

Reference:

C.Liu, Y.W.Chen. Crystal Structure of Sars-Cov-2 Nucleocapsid Protein C-Terminal Rna Binding Domain at 2.0A Resolution To Be Published.
Page generated: Mon Jul 29 20:39:38 2024

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