Chlorine in PDB 7f9b: Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95

Enzymatic activity of Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95

All present enzymatic activity of Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95:
6.1.1.15; 6.1.1.17;

Protein crystallography data

The structure of Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95, PDB code: 7f9b was solved by Y.Manickam, N.Malhotra, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	45.48 / 2.00
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	70.73, 90.96, 83.49, 90, 110.03, 90
*R / R_free (%)*	18.9 / 23.6

Other elements in 7f9b:

The structure of Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95 also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Calcium	(Ca)	6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95 (pdb code 7f9b). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95, PDB code: 7f9b:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7f9b

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Chlorine Binding Sites List in 7f9b

Chlorine binding site 1 out of 3 in the Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl1905 b:68.2 occ:0.95	CG2	A:THR1411	4.1	35.9	1.0
	NE	A:ARG1415	4.5	70.4	1.0
	OG1	A:THR1411	4.5	42.8	1.0
	CG	A:ARG1415	4.6	44.9	1.0
	CB	A:THR1411	4.8	36.2	1.0
	CD	A:ARG1415	4.8	52.8	1.0
	CG2	A:THR1414	4.9	37.0	1.0

Chlorine binding site 2 out of 3 in 7f9b

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Chlorine Binding Sites List in 7f9b

Chlorine binding site 2 out of 3 in the Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl1906 b:87.2 occ:1.00	CD	A:LYS1499	4.1	68.6	1.0
	CB	A:CYS1497	4.1	65.8	1.0
	CD2	A:TRP1456	4.2	61.2	1.0
	CG	A:TRP1456	4.2	59.5	1.0
	CE3	A:TRP1456	4.3	58.0	1.0
	CB	A:TRP1456	4.4	49.3	1.0
	CA	A:CYS1453	4.7	53.5	1.0
	CE2	A:TRP1456	4.8	65.0	1.0
	SG	A:CYS1497	4.8	71.2	1.0
	CD1	A:TRP1456	4.8	62.3	1.0
	CB	A:CYS1453	4.9	57.5	1.0
	CG	A:LYS1499	4.9	71.1	1.0
	SG	A:CYS1453	4.9	59.7	1.0
	CZ3	A:TRP1456	4.9	59.0	1.0

Chlorine binding site 3 out of 3 in 7f9b

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Chlorine Binding Sites List in 7f9b

Chlorine binding site 3 out of 3 in the Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Homo Sapiens Prolyl-Trna Synthetase (Hsprs) in Complex with L-Proline and Compound L95 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl1906 b:63.1 occ:0.76	NZ	B:LYS1499	4.1	62.3	1.0
	CG	B:LYS1499	4.2	65.2	1.0
	CB	B:LYS1499	4.9	60.7	1.0

Reference:

N.Malhotra, Y.Manickam, A.Sharma. Hsprs with Atp Binding Pocket Inhibitor To Be Published.

Page generated: Mon Jul 29 20:41:51 2024

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