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Chlorine in PDB 7fg8: H/D Exchanged Hen Egg-White Lysozyme Denatured in Acidic Conditions and Refolded in Solution

Enzymatic activity of H/D Exchanged Hen Egg-White Lysozyme Denatured in Acidic Conditions and Refolded in Solution

All present enzymatic activity of H/D Exchanged Hen Egg-White Lysozyme Denatured in Acidic Conditions and Refolded in Solution:
3.2.1.17;

Protein crystallography data

The structure of H/D Exchanged Hen Egg-White Lysozyme Denatured in Acidic Conditions and Refolded in Solution, PDB code: 7fg8 was solved by A.Kita, Y.Morimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.182, 79.182, 37.906, 90, 90, 90
R / Rfree (%) 23.3 / 26.6

Other elements in 7fg8:

The structure of H/D Exchanged Hen Egg-White Lysozyme Denatured in Acidic Conditions and Refolded in Solution also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the H/D Exchanged Hen Egg-White Lysozyme Denatured in Acidic Conditions and Refolded in Solution (pdb code 7fg8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the H/D Exchanged Hen Egg-White Lysozyme Denatured in Acidic Conditions and Refolded in Solution, PDB code: 7fg8:

Chlorine binding site 1 out of 1 in 7fg8

Go back to Chlorine Binding Sites List in 7fg8
Chlorine binding site 1 out of 1 in the H/D Exchanged Hen Egg-White Lysozyme Denatured in Acidic Conditions and Refolded in Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of H/D Exchanged Hen Egg-White Lysozyme Denatured in Acidic Conditions and Refolded in Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:27.3
occ:1.00
 DH A:TYR23 2.3 15.8 0.8
HH A:TYR23 2.3 15.8 0.2
OH A:TYR23 3.0 13.1 1.0
HE2 A:TYR23 3.1 18.1 1.0
D2 A:HOH356 3.2 34.0 1.0
D1 A:HOH356 3.3 34.0 1.0
HA3 A:GLY104 3.4 19.2 1.0
O A:HOH356 3.7 28.4 1.0
CE2 A:TYR23 3.7 15.1 1.0
CZ A:TYR23 3.7 12.1 1.0
D1 A:HOH330 3.9 49.1 1.0
HA2 A:GLY104 4.2 19.2 1.0
CA A:GLY104 4.2 16.0 1.0
O A:HOH330 4.2 40.9 1.0
O A:ARG21 4.7 17.9 1.0
H A:MET105 4.7 16.8 0.0
D A:MET105 4.7 16.8 1.0
N A:GLY104 4.8 15.7 1.0
HB3 A:ARG21 4.9 21.0 1.0
CE1 A:TYR23 4.9 15.7 1.0
CD2 A:TYR23 4.9 12.0 1.0
D2 A:HOH330 5.0 49.1 1.0

Reference:

A.Kita, Y.Morimoto. Hydrogen/Deuterium Exchange Behavior During Denaturing/Refolding Processes Determined in Tetragonal Hen Egg-White Lysozyme Crystals. Mol Biotechnol. V. 64 590 2022.
ISSN: ESSN 1559-0305
PubMed: 35028904
DOI: 10.1007/S12033-022-00447-7
Page generated: Mon Jul 29 20:46:20 2024

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