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Chlorine in PDB 7fgr: The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain.

Protein crystallography data

The structure of The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain., PDB code: 7fgr was solved by T.Tsuchida, T.Tsuchiya, K.Miyamoto, Y.In, K.Minoura, T.Taniguchi, T.Ishida, K.Tomoo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.67 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 179.05, 70.14, 41.26, 90, 93.15, 90
R / Rfree (%) 20 / 27.2

Other elements in 7fgr:

The structure of The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain. also contains other interesting chemical elements:

Iodine (I) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain. (pdb code 7fgr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain., PDB code: 7fgr:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7fgr

Go back to Chlorine Binding Sites List in 7fgr
Chlorine binding site 1 out of 3 in the The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl306

b:34.3
occ:1.00
CD H:ARG219 3.2 103.3 1.0
N H:ARG219 3.5 87.7 1.0
CG H:ARG219 3.5 96.1 1.0
CG H:PRO132 3.7 50.0 1.0
CB H:ARG219 3.8 92.8 1.0
NE H:ARG219 4.2 107.9 1.0
CA H:ARG219 4.2 87.9 1.0
CD H:PRO132 4.3 47.8 1.0
O H:PRO132 4.3 59.9 1.0
CA H:PRO218 4.4 39.8 1.0
C H:PRO218 4.4 37.7 1.0
CH2 H:TRP194 4.5 46.0 1.0
CB H:ALA131 4.7 40.2 1.0
CB H:PRO218 4.8 41.2 1.0
CB H:PRO132 4.8 54.7 1.0
N H:PRO132 4.8 50.1 1.0
CZ3 H:TRP194 4.9 41.5 1.0

Chlorine binding site 2 out of 3 in 7fgr

Go back to Chlorine Binding Sites List in 7fgr
Chlorine binding site 2 out of 3 in the The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl307

b:45.8
occ:1.00
NE2 H:GLN82 3.4 78.3 1.0
CG H:GLN82 3.7 59.3 1.0
CD H:GLN82 3.8 73.0 1.0
C H:VAL18 4.0 39.7 1.0
N H:LYS19 4.1 43.1 1.0
N H:VAL18 4.1 36.5 1.0
C H:SER17 4.2 35.3 1.0
CB H:SER17 4.2 39.0 1.0
O H:HOH497 4.2 41.1 1.0
O H:VAL18 4.2 35.8 1.0
CB H:LYS19 4.2 60.2 1.0
O H:SER17 4.3 33.5 1.0
CA H:VAL18 4.3 40.2 1.0
O H:HOH523 4.5 47.2 1.0
CE H:LYS19 4.6 81.0 1.0
CA H:LYS19 4.6 48.5 1.0
OE1 H:GLN82 4.7 81.7 1.0
CA H:SER17 4.8 38.0 1.0
CB H:GLN82 5.0 51.2 1.0

Chlorine binding site 3 out of 3 in 7fgr

Go back to Chlorine Binding Sites List in 7fgr
Chlorine binding site 3 out of 3 in the The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl303

b:38.5
occ:1.00
N L:THR21 3.6 59.4 1.0
CA L:LEU20 4.0 61.8 1.0
CD2 L:LEU20 4.0 58.0 1.0
CG2 L:THR110 4.2 48.6 1.0
C L:LEU20 4.3 64.2 1.0
CB L:SER7 4.4 61.2 1.0
OG1 L:THR21 4.4 68.4 1.0
O L:LYS19 4.4 53.2 1.0
CB L:THR21 4.5 65.8 1.0
O L:THR21 4.5 67.2 1.0
CB L:ALA10 4.5 47.2 1.0
CA L:THR21 4.6 60.6 1.0
CB L:LEU20 4.7 57.6 1.0
OG1 L:THR110 4.8 49.4 1.0
OG L:SER7 4.8 59.4 1.0
N L:SER7 4.9 58.7 1.0

Reference:

T.Tsuchida, T.Tsuchiya, K.Miyamoto, Y.In, K.Minoura, T.Taniguchi, T.Ishida, K.Tomoo. The Cross-Reaction Complex Structure with Vqifnk Peptide and the Tau Antibody'S Fab Domain. To Be Published.
Page generated: Mon Jul 29 20:46:57 2024

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