Chlorine in PDB 7fgv: H/D Exchanged Hen Egg-White Lysozyme Denatured in Heat Condition and Refolded in Solution

Enzymatic activity of H/D Exchanged Hen Egg-White Lysozyme Denatured in Heat Condition and Refolded in Solution

All present enzymatic activity of H/D Exchanged Hen Egg-White Lysozyme Denatured in Heat Condition and Refolded in Solution:
3.2.1.17;

Protein crystallography data

The structure of H/D Exchanged Hen Egg-White Lysozyme Denatured in Heat Condition and Refolded in Solution, PDB code: 7fgv was solved by A.Kita, Y.Morimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	N/A / 2.00
*Space group*	P 4₃ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	79.15, 79.15, 37.902, 90, 90, 90
*R / R_free (%)*	22.4 / 25

Other elements in 7fgv:

The structure of H/D Exchanged Hen Egg-White Lysozyme Denatured in Heat Condition and Refolded in Solution also contains other interesting chemical elements:

Sodium

(Na)

1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the H/D Exchanged Hen Egg-White Lysozyme Denatured in Heat Condition and Refolded in Solution (pdb code 7fgv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the H/D Exchanged Hen Egg-White Lysozyme Denatured in Heat Condition and Refolded in Solution, PDB code: 7fgv:

Chlorine binding site 1 out of 1 in 7fgv

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Chlorine Binding Sites List in 7fgv

Chlorine binding site 1 out of 1 in the H/D Exchanged Hen Egg-White Lysozyme Denatured in Heat Condition and Refolded in Solution

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of H/D Exchanged Hen Egg-White Lysozyme Denatured in Heat Condition and Refolded in Solution within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl201 b:26.0 occ:1.00	HH	A:TYR23	2.2	17.5	0.3
	DH	A:TYR23	2.3	17.5	0.7
	OH	A:TYR23	3.0	14.6	1.0
	D1	A:HOH348	3.0	33.1	1.0
	HE2	A:TYR23	3.1	22.1	1.0
	HA3	A:GLY104	3.4	25.3	1.0
	D2	A:HOH348	3.5	33.1	1.0
	O	A:HOH348	3.6	27.6	1.0
	CE2	A:TYR23	3.7	18.4	1.0
	CZ	A:TYR23	3.7	12.8	1.0
	D1	A:HOH345	3.8	47.2	1.0
	HA2	A:GLY104	4.2	25.3	1.0
	CA	A:GLY104	4.2	21.1	1.0
	O	A:HOH345	4.3	39.4	1.0
	O	A:ARG21	4.6	18.6	1.0
	D	A:MET105	4.7	17.9	1.0
	H	A:MET105	4.7	17.9	0.0
	HB3	A:ARG21	4.8	16.5	1.0
	N	A:GLY104	4.9	17.8	1.0
	CE1	A:TYR23	4.9	16.1	1.0
	CD2	A:TYR23	4.9	13.1	1.0

Reference:

A.Kita, Y.Morimoto. Hydrogen/Deuterium Exchange Behavior During Denaturing/Refolding Processes Determined in Tetragonal Hen Egg-White Lysozyme Crystals. Mol Biotechnol. V. 64 590 2022.
ISSN: ESSN 1559-0305
PubMed: 35028904
DOI: 10.1007/S12033-022-00447-7

Page generated: Mon Jul 29 20:47:01 2024

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