Chlorine in PDB 7fxc: Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One
Protein crystallography data
The structure of Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One, PDB code: 7fxc
was solved by
A.Ehler,
J.Benz,
U.Obst,
A.Albrecht-Harry,
M.G.Rudolph,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.79 /
1.12
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
32.147,
53.833,
75.311,
90,
90,
90
|
R / Rfree (%)
|
13.5 /
15.3
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One
(pdb code 7fxc). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One, PDB code: 7fxc:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 7fxc
Go back to
Chlorine Binding Sites List in 7fxc
Chlorine binding site 1 out
of 4 in the Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:13.2
occ:0.50
|
CL18
|
A:R80203
|
0.0
|
13.2
|
0.5
|
CL18
|
A:R80203
|
0.1
|
14.1
|
0.5
|
C14
|
A:R80203
|
1.7
|
12.4
|
0.5
|
C14
|
A:R80203
|
1.8
|
13.9
|
0.5
|
C11
|
A:R80203
|
2.7
|
13.0
|
0.5
|
C17
|
A:R80203
|
2.7
|
12.6
|
0.5
|
C11
|
A:R80203
|
2.7
|
12.8
|
0.5
|
C17
|
A:R80203
|
2.9
|
12.0
|
0.5
|
CL19
|
A:R80203
|
3.2
|
12.4
|
0.5
|
CL19
|
A:R80203
|
3.4
|
16.1
|
0.5
|
OD1
|
A:ASP76
|
3.5
|
11.0
|
1.0
|
NH2
|
A:ARG78
|
3.6
|
9.8
|
1.0
|
CG
|
A:ASP76
|
3.6
|
11.4
|
1.0
|
CG2
|
A:VAL25
|
3.7
|
10.3
|
1.0
|
OD2
|
A:ASP76
|
3.9
|
12.0
|
1.0
|
C15
|
A:R80203
|
4.0
|
13.7
|
0.5
|
C5
|
A:R80203
|
4.0
|
10.6
|
0.5
|
CG
|
A:MET20
|
4.1
|
8.7
|
1.0
|
C5
|
A:R80203
|
4.1
|
13.5
|
0.5
|
C15
|
A:R80203
|
4.1
|
13.3
|
0.5
|
CG1
|
A:VAL23
|
4.2
|
12.9
|
1.0
|
CE2
|
A:TYR19
|
4.3
|
8.4
|
1.0
|
CB
|
A:ASP76
|
4.3
|
11.8
|
1.0
|
O
|
A:HOH389
|
4.3
|
11.0
|
1.0
|
CZ
|
A:ARG78
|
4.5
|
9.6
|
1.0
|
C12
|
A:R80203
|
4.5
|
11.2
|
0.5
|
C12
|
A:R80203
|
4.6
|
13.2
|
0.5
|
CB
|
A:VAL23
|
4.7
|
11.5
|
1.0
|
NE
|
A:ARG78
|
4.7
|
10.4
|
1.0
|
CA
|
A:MET20
|
4.8
|
7.9
|
1.0
|
CB
|
A:MET20
|
4.8
|
8.4
|
1.0
|
CD2
|
A:TYR19
|
4.8
|
8.0
|
1.0
|
SD
|
A:MET20
|
4.8
|
10.0
|
1.0
|
CG2
|
A:VAL23
|
4.8
|
12.5
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 7fxc
Go back to
Chlorine Binding Sites List in 7fxc
Chlorine binding site 2 out
of 4 in the Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:14.1
occ:0.50
|
CL18
|
A:R80203
|
0.0
|
14.1
|
0.5
|
CL18
|
A:R80203
|
0.1
|
13.2
|
0.5
|
C14
|
A:R80203
|
1.6
|
12.4
|
0.5
|
C14
|
A:R80203
|
1.7
|
13.9
|
0.5
|
C11
|
A:R80203
|
2.7
|
13.0
|
0.5
|
C17
|
A:R80203
|
2.7
|
12.6
|
0.5
|
C11
|
A:R80203
|
2.7
|
12.8
|
0.5
|
C17
|
A:R80203
|
2.8
|
12.0
|
0.5
|
CL19
|
A:R80203
|
3.1
|
12.4
|
0.5
|
CL19
|
A:R80203
|
3.3
|
16.1
|
0.5
|
OD1
|
A:ASP76
|
3.4
|
11.0
|
1.0
|
NH2
|
A:ARG78
|
3.6
|
9.8
|
1.0
|
CG
|
A:ASP76
|
3.6
|
11.4
|
1.0
|
CG2
|
A:VAL25
|
3.7
|
10.3
|
1.0
|
OD2
|
A:ASP76
|
3.8
|
12.0
|
1.0
|
C15
|
A:R80203
|
3.9
|
13.7
|
0.5
|
C5
|
A:R80203
|
4.0
|
10.6
|
0.5
|
C5
|
A:R80203
|
4.1
|
13.5
|
0.5
|
CG
|
A:MET20
|
4.1
|
8.7
|
1.0
|
C15
|
A:R80203
|
4.1
|
13.3
|
0.5
|
CB
|
A:ASP76
|
4.3
|
11.8
|
1.0
|
CG1
|
A:VAL23
|
4.3
|
12.9
|
1.0
|
CE2
|
A:TYR19
|
4.3
|
8.4
|
1.0
|
O
|
A:HOH389
|
4.3
|
11.0
|
1.0
|
C12
|
A:R80203
|
4.5
|
11.2
|
0.5
|
CZ
|
A:ARG78
|
4.5
|
9.6
|
1.0
|
C12
|
A:R80203
|
4.6
|
13.2
|
0.5
|
NE
|
A:ARG78
|
4.7
|
10.4
|
1.0
|
CB
|
A:VAL23
|
4.7
|
11.5
|
1.0
|
CB
|
A:MET20
|
4.8
|
8.4
|
1.0
|
CA
|
A:MET20
|
4.8
|
7.9
|
1.0
|
SD
|
A:MET20
|
4.8
|
10.0
|
1.0
|
CD2
|
A:TYR19
|
4.9
|
8.0
|
1.0
|
CG2
|
A:VAL23
|
4.9
|
12.5
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 7fxc
Go back to
Chlorine Binding Sites List in 7fxc
Chlorine binding site 3 out
of 4 in the Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:12.4
occ:0.50
|
CL19
|
A:R80203
|
0.0
|
12.4
|
0.5
|
CL19
|
A:R80203
|
1.1
|
16.1
|
0.5
|
C17
|
A:R80203
|
1.7
|
12.6
|
0.5
|
C17
|
A:R80203
|
2.5
|
12.0
|
0.5
|
C15
|
A:R80203
|
2.7
|
13.7
|
0.5
|
C14
|
A:R80203
|
2.7
|
12.4
|
0.5
|
C14
|
A:R80203
|
3.1
|
13.9
|
0.5
|
CL18
|
A:R80203
|
3.1
|
14.1
|
0.5
|
CL18
|
A:R80203
|
3.2
|
13.2
|
0.5
|
SD
|
A:MET20
|
3.2
|
10.0
|
1.0
|
CB
|
A:ASP76
|
3.6
|
11.8
|
1.0
|
C15
|
A:R80203
|
3.7
|
13.3
|
0.5
|
CG2
|
A:VAL25
|
3.8
|
10.3
|
1.0
|
CG
|
A:MET20
|
3.8
|
8.7
|
1.0
|
CG1
|
A:VAL25
|
3.8
|
10.4
|
1.0
|
CB
|
A:ALA33
|
3.8
|
10.7
|
1.0
|
C12
|
A:R80203
|
4.0
|
11.2
|
0.5
|
C11
|
A:R80203
|
4.0
|
13.0
|
0.5
|
CG
|
A:ASP76
|
4.1
|
11.4
|
1.0
|
CG2
|
A:THR29
|
4.2
|
12.3
|
1.0
|
CB
|
A:VAL25
|
4.4
|
9.0
|
1.0
|
OD1
|
A:ASP76
|
4.4
|
11.0
|
1.0
|
C5
|
A:R80203
|
4.5
|
10.6
|
0.5
|
C11
|
A:R80203
|
4.5
|
12.8
|
0.5
|
CA
|
A:ASP76
|
4.6
|
11.6
|
1.0
|
CB
|
A:MET20
|
4.7
|
8.4
|
1.0
|
CE2
|
A:PHE57
|
4.7
|
17.4
|
1.0
|
N
|
A:ASP76
|
4.7
|
11.6
|
1.0
|
OD2
|
A:ASP76
|
4.7
|
12.0
|
1.0
|
C12
|
A:R80203
|
4.9
|
13.2
|
0.5
|
O
|
A:THR29
|
5.0
|
9.4
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 7fxc
Go back to
Chlorine Binding Sites List in 7fxc
Chlorine binding site 4 out
of 4 in the Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Human FABP4 in Complex with 6-[(3,4- Dichlorophenyl)Methyl]-5-Methyl-1,1-Dioxo-1,2,6-Thiadiazin-3-One within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:16.1
occ:0.50
|
CL19
|
A:R80203
|
0.0
|
16.1
|
0.5
|
C17
|
A:R80203
|
1.0
|
12.6
|
0.5
|
CL19
|
A:R80203
|
1.1
|
12.4
|
0.5
|
C15
|
A:R80203
|
1.6
|
13.7
|
0.5
|
C17
|
A:R80203
|
1.7
|
12.0
|
0.5
|
C14
|
A:R80203
|
2.3
|
12.4
|
0.5
|
C15
|
A:R80203
|
2.6
|
13.3
|
0.5
|
C14
|
A:R80203
|
2.7
|
13.9
|
0.5
|
C12
|
A:R80203
|
2.9
|
11.2
|
0.5
|
CL18
|
A:R80203
|
3.3
|
14.1
|
0.5
|
C11
|
A:R80203
|
3.3
|
13.0
|
0.5
|
CL18
|
A:R80203
|
3.4
|
13.2
|
0.5
|
C5
|
A:R80203
|
3.6
|
10.6
|
0.5
|
CB
|
A:ALA33
|
3.6
|
10.7
|
1.0
|
SD
|
A:MET20
|
3.7
|
10.0
|
1.0
|
C12
|
A:R80203
|
3.9
|
13.2
|
0.5
|
CB
|
A:ASP76
|
3.9
|
11.8
|
1.0
|
C11
|
A:R80203
|
4.0
|
12.8
|
0.5
|
CE2
|
A:PHE57
|
4.1
|
17.4
|
1.0
|
CG
|
A:MET20
|
4.3
|
8.7
|
1.0
|
CG
|
A:ASP76
|
4.4
|
11.4
|
1.0
|
OD1
|
A:ASP76
|
4.4
|
11.0
|
1.0
|
N
|
A:ASP76
|
4.4
|
11.6
|
1.0
|
C5
|
A:R80203
|
4.5
|
13.5
|
0.5
|
CA
|
A:ASP76
|
4.6
|
11.6
|
1.0
|
O
|
A:HOH433
|
4.6
|
16.4
|
1.0
|
CB
|
A:ALA75
|
4.7
|
11.2
|
1.0
|
CZ
|
A:PHE16
|
4.7
|
12.0
|
1.0
|
CG2
|
A:THR29
|
4.7
|
12.3
|
1.0
|
CZ
|
A:PHE57
|
4.8
|
17.5
|
1.0
|
CG2
|
A:VAL25
|
4.8
|
10.3
|
1.0
|
CD2
|
A:PHE57
|
4.8
|
16.1
|
1.0
|
CE2
|
A:PHE16
|
4.8
|
10.5
|
1.0
|
CG1
|
A:VAL25
|
4.9
|
10.4
|
1.0
|
C
|
A:ALA75
|
4.9
|
11.4
|
1.0
|
|
Reference:
U.Obst,
C.Magnone,
B.Kuhn,
M.G.Rudolph.
Crystal Structure of A Human FABP4 Complex To Be Published.
Page generated: Mon Jul 29 21:04:51 2024
|