Chlorine in PDB 7fxy: Crystal Structure of Human FABP4 in Complex with (4-Chlorophenyl) Methyl 5-Fluoro-2,4-Dioxo-1H-Pyrimidine-6-Carboxylate
Protein crystallography data
The structure of Crystal Structure of Human FABP4 in Complex with (4-Chlorophenyl) Methyl 5-Fluoro-2,4-Dioxo-1H-Pyrimidine-6-Carboxylate, PDB code: 7fxy
was solved by
A.Ehler,
J.Benz,
U.Obst,
J.Kiss,
M.G.Rudolph,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.40 /
1.13
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
32.535,
53.795,
74.775,
90,
90,
90
|
R / Rfree (%)
|
14.6 /
17.4
|
Other elements in 7fxy:
The structure of Crystal Structure of Human FABP4 in Complex with (4-Chlorophenyl) Methyl 5-Fluoro-2,4-Dioxo-1H-Pyrimidine-6-Carboxylate also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Human FABP4 in Complex with (4-Chlorophenyl) Methyl 5-Fluoro-2,4-Dioxo-1H-Pyrimidine-6-Carboxylate
(pdb code 7fxy). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Crystal Structure of Human FABP4 in Complex with (4-Chlorophenyl) Methyl 5-Fluoro-2,4-Dioxo-1H-Pyrimidine-6-Carboxylate, PDB code: 7fxy:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 7fxy
Go back to
Chlorine Binding Sites List in 7fxy
Chlorine binding site 1 out
of 2 in the Crystal Structure of Human FABP4 in Complex with (4-Chlorophenyl) Methyl 5-Fluoro-2,4-Dioxo-1H-Pyrimidine-6-Carboxylate
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Human FABP4 in Complex with (4-Chlorophenyl) Methyl 5-Fluoro-2,4-Dioxo-1H-Pyrimidine-6-Carboxylate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:25.9
occ:0.50
|
CL20
|
A:UKN201
|
0.0
|
25.9
|
0.5
|
CL20
|
A:UKN201
|
0.1
|
25.6
|
0.5
|
C19
|
A:UKN201
|
1.7
|
21.1
|
0.5
|
C19
|
A:UKN201
|
1.8
|
20.8
|
0.5
|
C18
|
A:UKN201
|
2.7
|
22.8
|
0.5
|
H28
|
A:UKN201
|
2.7
|
19.9
|
0.5
|
HB3
|
A:ASP76
|
2.7
|
17.1
|
1.0
|
C17
|
A:UKN201
|
2.8
|
21.2
|
0.5
|
C17
|
A:UKN201
|
2.8
|
21.0
|
0.5
|
H27
|
A:UKN201
|
2.8
|
19.0
|
0.5
|
C18
|
A:UKN201
|
2.8
|
20.9
|
0.5
|
H27
|
A:UKN201
|
2.9
|
20.7
|
0.5
|
H28
|
A:UKN201
|
3.0
|
21.0
|
0.5
|
HB1
|
A:ALA33
|
3.5
|
11.9
|
1.0
|
HE2
|
A:PHE57
|
3.5
|
20.1
|
1.0
|
HB3
|
A:ALA75
|
3.6
|
16.4
|
1.0
|
HB2
|
A:ALA33
|
3.6
|
12.6
|
1.0
|
CB
|
A:ASP76
|
3.7
|
14.9
|
1.0
|
HG22
|
A:THR29
|
3.7
|
14.6
|
1.0
|
HG21
|
A:VAL25
|
3.8
|
11.8
|
1.0
|
H
|
A:ASP76
|
3.9
|
15.0
|
1.0
|
CB
|
A:ALA33
|
3.9
|
12.3
|
1.0
|
HG11
|
A:VAL25
|
3.9
|
11.8
|
1.0
|
HB3
|
A:ALA33
|
3.9
|
12.4
|
1.0
|
C16
|
A:UKN201
|
4.0
|
24.4
|
0.5
|
SD
|
A:MET20
|
4.0
|
11.9
|
1.0
|
N
|
A:ASP76
|
4.0
|
15.0
|
1.0
|
C15
|
A:UKN201
|
4.1
|
22.9
|
0.5
|
C15
|
A:UKN201
|
4.1
|
21.6
|
0.5
|
C16
|
A:UKN201
|
4.1
|
22.3
|
0.5
|
OD1
|
A:ASP76
|
4.1
|
14.7
|
1.0
|
CG
|
A:ASP76
|
4.1
|
15.2
|
1.0
|
CE2
|
A:PHE57
|
4.2
|
21.7
|
1.0
|
HG2
|
A:MET20
|
4.2
|
10.5
|
1.0
|
HZ
|
A:PHE57
|
4.2
|
18.8
|
1.0
|
HB2
|
A:ASP76
|
4.3
|
15.8
|
1.0
|
CA
|
A:ASP76
|
4.3
|
16.1
|
1.0
|
HA
|
A:ASP76
|
4.3
|
15.4
|
1.0
|
HG21
|
A:THR29
|
4.4
|
13.8
|
1.0
|
CB
|
A:ALA75
|
4.4
|
15.9
|
1.0
|
CG2
|
A:THR29
|
4.4
|
14.1
|
1.0
|
HB1
|
A:ALA75
|
4.4
|
14.2
|
1.0
|
C14
|
A:UKN201
|
4.5
|
21.6
|
0.5
|
C
|
A:ALA75
|
4.5
|
13.8
|
1.0
|
HG23
|
A:THR29
|
4.5
|
13.7
|
1.0
|
HZ
|
A:PHE16
|
4.6
|
16.1
|
1.0
|
CZ
|
A:PHE57
|
4.6
|
21.4
|
1.0
|
C14
|
A:UKN201
|
4.6
|
20.8
|
0.5
|
CG2
|
A:VAL25
|
4.7
|
12.0
|
1.0
|
CG1
|
A:VAL25
|
4.7
|
11.5
|
1.0
|
HG13
|
A:VAL25
|
4.7
|
11.6
|
1.0
|
H26
|
A:UKN201
|
4.7
|
22.8
|
0.5
|
CG
|
A:MET20
|
4.7
|
10.6
|
1.0
|
HG22
|
A:VAL25
|
4.8
|
12.7
|
1.0
|
H25
|
A:UKN201
|
4.8
|
20.7
|
0.5
|
H25
|
A:UKN201
|
4.9
|
23.0
|
0.5
|
H26
|
A:UKN201
|
4.9
|
21.9
|
0.5
|
CA
|
A:ALA75
|
5.0
|
14.1
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 7fxy
Go back to
Chlorine Binding Sites List in 7fxy
Chlorine binding site 2 out
of 2 in the Crystal Structure of Human FABP4 in Complex with (4-Chlorophenyl) Methyl 5-Fluoro-2,4-Dioxo-1H-Pyrimidine-6-Carboxylate
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Human FABP4 in Complex with (4-Chlorophenyl) Methyl 5-Fluoro-2,4-Dioxo-1H-Pyrimidine-6-Carboxylate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:25.6
occ:0.50
|
CL20
|
A:UKN201
|
0.0
|
25.6
|
0.5
|
CL20
|
A:UKN201
|
0.1
|
25.9
|
0.5
|
C19
|
A:UKN201
|
1.7
|
21.1
|
0.5
|
C19
|
A:UKN201
|
1.8
|
20.8
|
0.5
|
C18
|
A:UKN201
|
2.6
|
22.8
|
0.5
|
H28
|
A:UKN201
|
2.6
|
19.9
|
0.5
|
C17
|
A:UKN201
|
2.7
|
21.2
|
0.5
|
HB3
|
A:ASP76
|
2.7
|
17.1
|
1.0
|
C18
|
A:UKN201
|
2.8
|
20.9
|
0.5
|
C17
|
A:UKN201
|
2.8
|
21.0
|
0.5
|
H27
|
A:UKN201
|
2.8
|
19.0
|
0.5
|
H28
|
A:UKN201
|
2.9
|
21.0
|
0.5
|
H27
|
A:UKN201
|
2.9
|
20.7
|
0.5
|
HE2
|
A:PHE57
|
3.5
|
20.1
|
1.0
|
HB3
|
A:ALA75
|
3.5
|
16.4
|
1.0
|
HB1
|
A:ALA33
|
3.5
|
11.9
|
1.0
|
HB2
|
A:ALA33
|
3.6
|
12.6
|
1.0
|
CB
|
A:ASP76
|
3.7
|
14.9
|
1.0
|
H
|
A:ASP76
|
3.8
|
15.0
|
1.0
|
HG22
|
A:THR29
|
3.8
|
14.6
|
1.0
|
HG21
|
A:VAL25
|
3.8
|
11.8
|
1.0
|
C16
|
A:UKN201
|
3.9
|
24.4
|
0.5
|
CB
|
A:ALA33
|
3.9
|
12.3
|
1.0
|
HG11
|
A:VAL25
|
4.0
|
11.8
|
1.0
|
N
|
A:ASP76
|
4.0
|
15.0
|
1.0
|
HB3
|
A:ALA33
|
4.0
|
12.4
|
1.0
|
C15
|
A:UKN201
|
4.0
|
22.9
|
0.5
|
C16
|
A:UKN201
|
4.1
|
22.3
|
0.5
|
SD
|
A:MET20
|
4.1
|
11.9
|
1.0
|
C15
|
A:UKN201
|
4.1
|
21.6
|
0.5
|
OD1
|
A:ASP76
|
4.1
|
14.7
|
1.0
|
CG
|
A:ASP76
|
4.1
|
15.2
|
1.0
|
CE2
|
A:PHE57
|
4.2
|
21.7
|
1.0
|
HZ
|
A:PHE57
|
4.2
|
18.8
|
1.0
|
CA
|
A:ASP76
|
4.3
|
16.1
|
1.0
|
HG2
|
A:MET20
|
4.3
|
10.5
|
1.0
|
CB
|
A:ALA75
|
4.3
|
15.9
|
1.0
|
HB2
|
A:ASP76
|
4.3
|
15.8
|
1.0
|
HA
|
A:ASP76
|
4.3
|
15.4
|
1.0
|
HB1
|
A:ALA75
|
4.4
|
14.2
|
1.0
|
HG21
|
A:THR29
|
4.4
|
13.8
|
1.0
|
C
|
A:ALA75
|
4.4
|
13.8
|
1.0
|
C14
|
A:UKN201
|
4.5
|
21.6
|
0.5
|
CG2
|
A:THR29
|
4.5
|
14.1
|
1.0
|
C14
|
A:UKN201
|
4.6
|
20.8
|
0.5
|
HZ
|
A:PHE16
|
4.6
|
16.1
|
1.0
|
HG23
|
A:THR29
|
4.6
|
13.7
|
1.0
|
CZ
|
A:PHE57
|
4.6
|
21.4
|
1.0
|
H26
|
A:UKN201
|
4.6
|
22.8
|
0.5
|
CG2
|
A:VAL25
|
4.7
|
12.0
|
1.0
|
HG13
|
A:VAL25
|
4.8
|
11.6
|
1.0
|
CG1
|
A:VAL25
|
4.8
|
11.5
|
1.0
|
H26
|
A:UKN201
|
4.8
|
21.9
|
0.5
|
H25
|
A:UKN201
|
4.8
|
20.7
|
0.5
|
CG
|
A:MET20
|
4.8
|
10.6
|
1.0
|
H25
|
A:UKN201
|
4.8
|
23.0
|
0.5
|
HG22
|
A:VAL25
|
4.9
|
12.7
|
1.0
|
CA
|
A:ALA75
|
4.9
|
14.1
|
1.0
|
O
|
A:ALA75
|
4.9
|
17.7
|
1.0
|
|
Reference:
U.Obst,
C.Magnone,
B.Kuhn,
M.G.Rudolph.
Crystal Structure of A Human FABP4 Complex To Be Published.
Page generated: Mon Jul 29 21:05:54 2024
|