Chlorine in PDB 7fyr: Crystal Structure of Human FABP4 in Complex with 5-(3,4- Dichlorophenyl)-5-Methyl-2-Sulfanylidene-1,3-Diazinane-4,6-Dione
Protein crystallography data
The structure of Crystal Structure of Human FABP4 in Complex with 5-(3,4- Dichlorophenyl)-5-Methyl-2-Sulfanylidene-1,3-Diazinane-4,6-Dione, PDB code: 7fyr
was solved by
A.Ehler,
J.Benz,
U.Obst,
J.Borgulya,
M.G.Rudolph,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.73 /
1.05
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
32.513,
53.769,
75.09,
90,
90,
90
|
R / Rfree (%)
|
14.9 /
18.4
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Human FABP4 in Complex with 5-(3,4- Dichlorophenyl)-5-Methyl-2-Sulfanylidene-1,3-Diazinane-4,6-Dione
(pdb code 7fyr). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Crystal Structure of Human FABP4 in Complex with 5-(3,4- Dichlorophenyl)-5-Methyl-2-Sulfanylidene-1,3-Diazinane-4,6-Dione, PDB code: 7fyr:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 7fyr
Go back to
Chlorine Binding Sites List in 7fyr
Chlorine binding site 1 out
of 2 in the Crystal Structure of Human FABP4 in Complex with 5-(3,4- Dichlorophenyl)-5-Methyl-2-Sulfanylidene-1,3-Diazinane-4,6-Dione
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Human FABP4 in Complex with 5-(3,4- Dichlorophenyl)-5-Methyl-2-Sulfanylidene-1,3-Diazinane-4,6-Dione within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:20.4
occ:1.00
|
CL16
|
A:W9F201
|
0.0
|
20.4
|
1.0
|
C12
|
A:W9F201
|
1.7
|
14.9
|
1.0
|
C06
|
A:W9F201
|
2.7
|
15.9
|
1.0
|
H22
|
A:W9F201
|
2.7
|
16.2
|
1.0
|
C15
|
A:W9F201
|
2.7
|
16.5
|
1.0
|
HB3
|
A:ASP76
|
3.1
|
14.5
|
1.0
|
HB1
|
A:ALA33
|
3.2
|
10.5
|
1.0
|
CL18
|
A:W9F201
|
3.2
|
17.3
|
1.0
|
HB3
|
A:ALA75
|
3.5
|
16.7
|
1.0
|
HB2
|
A:ALA33
|
3.7
|
10.5
|
1.0
|
CB
|
A:ALA33
|
3.7
|
10.7
|
1.0
|
HE2
|
A:PHE57
|
3.8
|
19.6
|
1.0
|
HB3
|
A:ALA33
|
3.8
|
10.5
|
1.0
|
HZ
|
A:PHE16
|
3.8
|
13.1
|
1.0
|
SD
|
A:MET20
|
3.9
|
10.6
|
1.0
|
C02
|
A:W9F201
|
4.0
|
16.3
|
1.0
|
C13
|
A:W9F201
|
4.0
|
16.1
|
1.0
|
CB
|
A:ASP76
|
4.0
|
14.3
|
1.0
|
HG21
|
A:VAL25
|
4.0
|
10.2
|
1.0
|
HG2
|
A:MET20
|
4.0
|
9.2
|
1.0
|
H
|
A:ASP76
|
4.0
|
13.9
|
1.0
|
N
|
A:ASP76
|
4.2
|
14.3
|
1.0
|
HG22
|
A:THR29
|
4.2
|
11.5
|
1.0
|
OD1
|
A:ASP76
|
4.3
|
12.2
|
1.0
|
HG11
|
A:VAL25
|
4.3
|
9.6
|
1.0
|
CB
|
A:ALA75
|
4.4
|
16.6
|
1.0
|
HE2
|
A:PHE16
|
4.4
|
13.0
|
1.0
|
CG
|
A:ASP76
|
4.4
|
12.1
|
1.0
|
HB1
|
A:ALA75
|
4.5
|
16.0
|
1.0
|
C07
|
A:W9F201
|
4.5
|
14.8
|
1.0
|
CZ
|
A:PHE16
|
4.5
|
14.2
|
1.0
|
CE2
|
A:PHE57
|
4.5
|
21.1
|
1.0
|
CG
|
A:MET20
|
4.6
|
9.4
|
1.0
|
O
|
A:HOH359
|
4.6
|
18.5
|
1.0
|
CA
|
A:ASP76
|
4.6
|
15.3
|
1.0
|
HB2
|
A:ASP76
|
4.6
|
14.4
|
1.0
|
HA
|
A:ASP76
|
4.6
|
15.3
|
1.0
|
C
|
A:ALA75
|
4.7
|
14.6
|
1.0
|
H26
|
A:W9F201
|
4.8
|
15.8
|
1.0
|
CE2
|
A:PHE16
|
4.8
|
13.2
|
1.0
|
HG23
|
A:THR29
|
4.9
|
11.7
|
1.0
|
CG2
|
A:THR29
|
4.9
|
12.1
|
1.0
|
CG2
|
A:VAL25
|
5.0
|
10.5
|
1.0
|
HG21
|
A:THR29
|
5.0
|
12.0
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 7fyr
Go back to
Chlorine Binding Sites List in 7fyr
Chlorine binding site 2 out
of 2 in the Crystal Structure of Human FABP4 in Complex with 5-(3,4- Dichlorophenyl)-5-Methyl-2-Sulfanylidene-1,3-Diazinane-4,6-Dione
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Human FABP4 in Complex with 5-(3,4- Dichlorophenyl)-5-Methyl-2-Sulfanylidene-1,3-Diazinane-4,6-Dione within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:17.3
occ:1.00
|
CL18
|
A:W9F201
|
0.0
|
17.3
|
1.0
|
C15
|
A:W9F201
|
1.7
|
16.5
|
1.0
|
C13
|
A:W9F201
|
2.6
|
16.1
|
1.0
|
C12
|
A:W9F201
|
2.7
|
14.9
|
1.0
|
H26
|
A:W9F201
|
2.8
|
15.8
|
1.0
|
HG2
|
A:MET20
|
3.1
|
9.2
|
1.0
|
HH21
|
A:ARG78
|
3.1
|
10.5
|
1.0
|
CL16
|
A:W9F201
|
3.2
|
20.4
|
1.0
|
HG21
|
A:VAL25
|
3.3
|
10.2
|
1.0
|
HE2
|
A:TYR19
|
3.4
|
8.0
|
1.0
|
OD1
|
A:ASP76
|
3.6
|
12.2
|
1.0
|
NH2
|
A:ARG78
|
3.7
|
10.6
|
1.0
|
HH22
|
A:ARG78
|
3.7
|
10.7
|
1.0
|
HG11
|
A:VAL23
|
3.8
|
12.6
|
1.0
|
CG
|
A:ASP76
|
3.9
|
12.1
|
1.0
|
C07
|
A:W9F201
|
4.0
|
14.8
|
1.0
|
HG23
|
A:VAL25
|
4.0
|
10.4
|
1.0
|
CG2
|
A:VAL25
|
4.0
|
10.5
|
1.0
|
HB3
|
A:ASP76
|
4.0
|
14.5
|
1.0
|
CG
|
A:MET20
|
4.0
|
9.4
|
1.0
|
C06
|
A:W9F201
|
4.0
|
15.9
|
1.0
|
HZ
|
A:PHE16
|
4.2
|
13.1
|
1.0
|
HG22
|
A:VAL25
|
4.2
|
10.6
|
1.0
|
HG21
|
A:VAL23
|
4.2
|
11.7
|
1.0
|
HA
|
A:MET20
|
4.2
|
8.4
|
1.0
|
CE2
|
A:TYR19
|
4.2
|
8.5
|
1.0
|
OD2
|
A:ASP76
|
4.2
|
12.6
|
1.0
|
O
|
A:HOH346
|
4.3
|
11.0
|
1.0
|
HE
|
A:ARG78
|
4.4
|
11.3
|
1.0
|
HD2
|
A:TYR19
|
4.4
|
8.5
|
1.0
|
HG3
|
A:MET20
|
4.4
|
9.4
|
1.0
|
CB
|
A:ASP76
|
4.5
|
14.3
|
1.0
|
C02
|
A:W9F201
|
4.6
|
16.3
|
1.0
|
HB
|
A:VAL23
|
4.6
|
12.0
|
1.0
|
CG1
|
A:VAL23
|
4.6
|
13.3
|
1.0
|
HG12
|
A:VAL23
|
4.7
|
13.0
|
1.0
|
HE1
|
A:PHE16
|
4.7
|
13.3
|
1.0
|
H23
|
A:W9F201
|
4.7
|
15.6
|
1.0
|
SD
|
A:MET20
|
4.7
|
10.6
|
1.0
|
CZ
|
A:ARG78
|
4.7
|
10.8
|
1.0
|
CZ
|
A:PHE16
|
4.7
|
14.2
|
1.0
|
CD2
|
A:TYR19
|
4.7
|
9.0
|
1.0
|
H22
|
A:W9F201
|
4.8
|
16.2
|
1.0
|
H
|
A:ASP76
|
4.8
|
13.9
|
1.0
|
CB
|
A:MET20
|
4.9
|
8.9
|
1.0
|
HB3
|
A:MET20
|
4.9
|
9.0
|
1.0
|
CE1
|
A:PHE16
|
5.0
|
13.9
|
1.0
|
CA
|
A:MET20
|
5.0
|
8.3
|
1.0
|
CB
|
A:VAL23
|
5.0
|
11.5
|
1.0
|
CG2
|
A:VAL23
|
5.0
|
12.8
|
1.0
|
|
Reference:
U.Obst,
C.Magnone,
B.Kuhn,
M.G.Rudolph.
Crystal Structure of A Human FABP4 Complex To Be Published.
Page generated: Mon Jul 29 21:08:09 2024
|