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Chlorine in PDB 7gcf: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jan-Ghe-5A013BED-4 (Mpro-X10604)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jan-Ghe-5A013BED-4 (Mpro-X10604)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jan-Ghe-5A013BED-4 (Mpro-X10604):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jan-Ghe-5A013BED-4 (Mpro-X10604), PDB code: 7gcf was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.84 / 1.42
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.779, 53.422, 44.43, 90, 101.04, 90
R / Rfree (%) 17.2 / 21.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jan-Ghe-5A013BED-4 (Mpro-X10604) (pdb code 7gcf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jan-Ghe-5A013BED-4 (Mpro-X10604), PDB code: 7gcf:

Chlorine binding site 1 out of 1 in 7gcf

Go back to Chlorine Binding Sites List in 7gcf
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jan-Ghe-5A013BED-4 (Mpro-X10604)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jan-Ghe-5A013BED-4 (Mpro-X10604) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:40.7
occ:1.00
CL A:LKX404 0.0 40.7 1.0
C A:LKX404 1.7 39.6 1.0
C9 A:LKX404 2.7 39.8 1.0
C1 A:LKX404 2.7 40.5 1.0
CB A:ASP187 3.3 19.2 1.0
ND1 A:HIS41 3.4 22.5 1.0
CA A:ASP187 3.5 19.9 1.0
CE A:MET49 3.7 38.5 1.0
C A:ASP187 3.8 20.7 1.0
O A:HIS164 3.8 18.6 1.0
CB A:MET165 3.8 21.8 1.0
CE1 A:HIS41 3.9 22.4 1.0
SD A:MET165 4.0 31.0 1.0
C2 A:LKX404 4.0 41.3 1.0
C4 A:LKX404 4.0 40.2 1.0
CG A:HIS41 4.0 21.4 1.0
O A:ASP187 4.1 20.2 1.0
N A:ARG188 4.2 22.8 1.0
CG A:MET165 4.2 24.0 1.0
O A:HOH588 4.3 17.1 1.0
C A:HIS164 4.4 17.3 1.0
CB A:HIS41 4.4 20.1 1.0
C3 A:LKX404 4.5 41.2 1.0
CB A:HIS164 4.5 15.4 1.0
NE2 A:HIS41 4.6 22.9 1.0
CG A:ASP187 4.7 19.2 1.0
OH A:TYR54 4.7 18.7 1.0
CD2 A:HIS41 4.7 22.1 1.0
N A:ASP187 4.9 19.4 1.0
CA A:MET165 4.9 19.9 1.0
N A:MET165 5.0 18.6 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Mon Jul 29 21:18:23 2024

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