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Chlorine in PDB 7gde: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-12 (Mpro-X10976)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-12 (Mpro-X10976)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-12 (Mpro-X10976):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-12 (Mpro-X10976), PDB code: 7gde was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.01 / 1.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.03, 53.51, 44.436, 90, 100.8, 90
R / Rfree (%) 18.1 / 22.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-12 (Mpro-X10976) (pdb code 7gde). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-12 (Mpro-X10976), PDB code: 7gde:

Chlorine binding site 1 out of 1 in 7gde

Go back to Chlorine Binding Sites List in 7gde
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-12 (Mpro-X10976)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-12 (Mpro-X10976) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:25.0
occ:1.00
CL A:M7X404 0.0 25.0 1.0
C11 A:M7X404 1.7 22.4 1.0
C12 A:M7X404 2.7 21.7 1.0
C10 A:M7X404 2.7 22.7 1.0
CB A:ASP187 3.2 17.4 1.0
ND1 A:HIS41 3.4 17.2 1.0
CA A:ASP187 3.5 18.1 1.0
CB A:MET165 3.8 17.4 1.0
O A:HIS164 3.9 15.2 1.0
C A:ASP187 3.9 19.3 1.0
CE1 A:HIS41 3.9 17.3 1.0
C9 A:M7X404 4.0 22.2 1.0
C7 A:M7X404 4.0 21.2 1.0
SD A:MET165 4.0 21.9 1.0
O A:HOH601 4.0 13.0 1.0
CG A:HIS41 4.1 16.6 1.0
CB A:HIS164 4.2 14.2 1.0
C A:HIS164 4.3 14.9 1.0
CG A:MET165 4.3 18.3 1.0
O A:ASP187 4.4 18.6 1.0
N A:ARG188 4.4 21.4 1.0
CE A:MET49 4.4 39.7 1.0
C8 A:M7X404 4.5 21.3 1.0
CB A:HIS41 4.5 16.3 1.0
CG A:ASP187 4.6 17.2 1.0
CA A:MET165 4.7 16.3 1.0
ND1 A:HIS164 4.7 14.0 1.0
NE2 A:HIS41 4.8 17.4 1.0
N A:MET165 4.8 15.5 1.0
N A:ASP187 4.8 17.1 1.0
CZ A:PHE181 4.8 14.8 1.0
CA A:HIS164 4.8 14.6 1.0
CD2 A:HIS41 4.9 17.1 1.0
OH A:TYR54 4.9 18.6 1.0
OD2 A:ASP187 5.0 17.1 1.0
CG A:HIS164 5.0 14.1 1.0
CE A:MET165 5.0 21.0 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Thu Dec 28 02:36:27 2023

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